Analysis of interatomic Contacts of Structural Units in PDB entry:
8DC2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DC2 entry

There are 4 chains in PDB entry 8DC2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 4ASP 742
B
 U -34 C 16
C
 G -16 A 9
D
 T -9 G 0
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 8DC2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 52Right-handed alpha
Helix 2
AA2
A
56 64Right-handed 310
Helix 3
AA3
A
65 69Right-handed 310
Helix 4
AA4
A
71 79Right-handed alpha
Helix 5
AA5
A
86 91Right-handed 310
Helix 6
AA6
A
96 112Right-handed alpha
Helix 7
AA7
A
124 131Right-handed alpha
Helix 8
AA8
A
132 146Right-handed alpha
Helix 9
AA9
A
162 177Right-handed alpha
Helix 10
AB1
A
181 195Right-handed alpha
Helix 11
AB2
A
199 215Right-handed alpha
Helix 12
AB3
A
216 234Right-handed alpha
Helix 13
AB4
A
294 298Right-handed alpha
Helix 14
AB5
A
359 365Right-handed alpha
Helix 15
AB6
A
367 372Right-handed alpha
Helix 16
AB7
A
375 386Right-handed alpha
Helix 17
AB8
A
395 408Right-handed alpha
Helix 18
AB9
A
413 435Right-handed alpha
Helix 19
AC1
A
436 472Right-handed alpha
Helix 20
AC2
A
475 482Right-handed alpha
Helix 21
AC3
A
483 486Right-handed 310
Helix 22
AC4
A
487 523Right-handed alpha
Helix 23
AC5
A
597 611Right-handed alpha
Helix 24
AC6
A
615 627Right-handed alpha
Helix 25
AC7
A
665 669Right-handed 310
Helix 26
AC8
A
680 695Right-handed alpha
Helix 27
AC9
A
695 702Right-handed alpha
Helix 28
AD1
A
724 735Right-handed alpha
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There are 3 sheets in PDB entry 8DC2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 250first strand
Strand 2
A
299 308anti-parallel
Strand 3
A
311 321anti-parallel
Strand 4
A
11 21anti-parallel
Strand 5
A
275 279anti-parallel
Strand 6
A
267 271anti-parallel
Strand 7
A
257 261anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 287first strand
Strand 2
A
290 291anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 391first strand
Strand 2
A
344 349anti-parallel
Strand 3
A
332 336anti-parallel
Strand 4
A
526 530parallel
Strand 5
A
630 634parallel
Strand 6
A
718 720parallel
Strand 7
A
703 705anti-parallel
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