Analysis of interatomic Contacts of Structural Units in PDB entry:
8DC5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DC5 entry

There are 2 chains in PDB entry 8DC5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 257GLY 513
B
 ILE 258ILE 512
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 8DC5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
260 276Right-handed alpha
Helix 2
AA2
A
286 295Right-handed alpha
Helix 3
AA3
A
300 313Right-handed alpha
Helix 4
AA4
A
369 373Right-handed 310
Helix 5
AA5
B
260 276Right-handed alpha
Helix 6
AA6
B
286 295Right-handed alpha
Helix 7
AA7
B
300 313Right-handed alpha
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There are 6 sheets in PDB entry 8DC5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 359first strand
Strand 2
A
364 367anti-parallel
Strand 3
A
443 447anti-parallel
Strand 4
A
436 439anti-parallel
Strand 5
A
470 473anti-parallel
Strand 6
A
418 422anti-parallel
Strand 7
A
407 411anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
379 380first strand
Strand 2
A
463 465anti-parallel
Strand 3
A
458 459anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 432first strand
Strand 2
A
484 491anti-parallel
Strand 3
A
504 511anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
356 359first strand
Strand 2
B
364 367anti-parallel
Strand 3
B
443 447anti-parallel
Strand 4
B
436 440anti-parallel
Strand 5
B
469 473anti-parallel
Strand 6
B
417 422anti-parallel
Strand 7
B
407 412anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
389 390first strand
Strand 2
B
504 511parallel
Strand 3
B
484 491anti-parallel
Strand 4
B
430 432anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
458 459first strand
Strand 2
B
463 464anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il