Analysis of interatomic Contacts of Structural Units in PDB entry:
8DCD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DCD entry

There are 2 chains in PDB entry 8DCD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 481
B	MET 1	GLY 481

There are 47 helices in PDB entry 8DCD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	41	Right-handed alpha
Helix 2	AA2	A	42	51	Right-handed alpha
Helix 3	AA3	A	88	92	Right-handed 310
Helix 4	AA4	A	109	113	Right-handed alpha
Helix 5	AA5	A	115	127	Right-handed alpha
Helix 6	AA6	A	140	142	Right-handed 310
Helix 7	AA7	A	143	151	Right-handed alpha
Helix 8	AA8	A	151	158	Right-handed alpha
Helix 9	AA9	A	162	174	Right-handed 310
Helix 10	AB1	A	179	183	Right-handed 310
Helix 11	AB2	A	184	192	Right-handed alpha
Helix 12	AB3	A	193	195	Right-handed 310
Helix 13	AB4	A	215	222	Right-handed alpha
Helix 14	AB5	A	237	256	Right-handed alpha
Helix 15	AB6	A	257	259	Right-handed 310
Helix 16	AB7	A	265	269	Right-handed 310
Helix 17	AB8	A	275	312	Right-handed alpha
Helix 18	AB9	A	365	370	Right-handed alpha
Helix 19	AC1	A	391	398	Right-handed alpha
Helix 20	AC2	A	411	419	Right-handed alpha
Helix 21	AC3	A	420	430	Right-handed alpha
Helix 22	AC4	A	439	446	Right-handed alpha
Helix 23	AC5	A	447	451	Right-handed 310
Helix 24	AC6	A	453	465	Right-handed alpha
Helix 25	AC7	B	31	41	Right-handed alpha
Helix 26	AC8	B	42	51	Right-handed alpha
Helix 27	AC9	B	88	92	Right-handed 310
Helix 28	AD1	B	109	113	Right-handed alpha
Helix 29	AD2	B	115	127	Right-handed alpha
Helix 30	AD3	B	140	143	Right-handed 310
Helix 31	AD4	B	144	151	Right-handed alpha
Helix 32	AD5	B	151	158	Right-handed alpha
Helix 33	AD6	B	162	174	Right-handed 310
Helix 34	AD7	B	179	183	Right-handed 310
Helix 35	AD8	B	184	192	Right-handed alpha
Helix 36	AD9	B	193	195	Right-handed 310
Helix 37	AE1	B	215	222	Right-handed alpha
Helix 38	AE2	B	237	260	Right-handed alpha
Helix 39	AE3	B	265	269	Right-handed 310
Helix 40	AE4	B	275	312	Right-handed alpha
Helix 41	AE5	B	365	370	Right-handed alpha
Helix 42	AE6	B	391	398	Right-handed alpha
Helix 43	AE7	B	411	419	Right-handed alpha
Helix 44	AE8	B	420	431	Right-handed alpha
Helix 45	AE9	B	439	446	Right-handed alpha
Helix 46	AF1	B	447	451	Right-handed 310
Helix 47	AF2	B	453	464	Right-handed alpha

There are 10 sheets in PDB entry 8DCD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	9	first strand
Strand 2	A	12	15	anti-parallel
Strand 3	A	26	29	anti-parallel
Strand 4	A	60	67	parallel
Strand 5	A	74	81	anti-parallel
Strand 6	A	342	351	anti-parallel
Strand 7	A	330	339	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	271	272	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	328	first strand
Strand 2	A	99	108	anti-parallel
Strand 3	A	228	235	anti-parallel
Strand 4	A	204	213	anti-parallel
Strand 5	A	468	480	anti-parallel
Strand 6	A	385	389	anti-parallel
Strand 7	A	374	377	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	328	first strand
Strand 2	A	99	108	anti-parallel
Strand 3	A	228	235	anti-parallel
Strand 4	A	204	213	anti-parallel
Strand 5	A	468	480	anti-parallel
Strand 6	A	434	437	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	355	first strand
Strand 2	A	401	403	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	9	first strand
Strand 2	B	12	15	anti-parallel
Strand 3	B	26	29	anti-parallel
Strand 4	B	60	67	parallel
Strand 5	B	74	81	anti-parallel
Strand 6	B	342	351	anti-parallel
Strand 7	B	331	339	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	87	first strand
Strand 2	B	271	272	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	328	first strand
Strand 2	B	99	108	anti-parallel
Strand 3	B	228	235	anti-parallel
Strand 4	B	204	213	anti-parallel
Strand 5	B	467	480	anti-parallel
Strand 6	B	385	390	anti-parallel
Strand 7	B	374	377	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	328	first strand
Strand 2	B	99	108	anti-parallel
Strand 3	B	228	235	anti-parallel
Strand 4	B	204	213	anti-parallel
Strand 5	B	467	480	anti-parallel
Strand 6	B	434	437	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	355	first strand
Strand 2	B	401	403	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DCD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DCD