Analysis of interatomic Contacts of Structural Units in PDB entry:
8DCE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DCE entry

There are 2 chains in PDB entry 8DCE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLU 1THR 268
A
 ASN 334THR 527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 8DCE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
28 32Right-handed 310
Helix 2
AA2
H
86 90Right-handed 310
Helix 3
AA3
H
237 241Right-handed 310
Helix 4
AA4
A
338 343Right-handed alpha
Helix 5
AA5
A
349 353Right-handed 310
Helix 6
AA6
A
365 370Right-handed alpha
Helix 7
AA7
A
383 389Right-handed 310
Helix 8
AA8
A
405 410Right-handed 310
Helix 9
AA9
A
416 422Right-handed alpha
Helix 10
AB1
A
438 443Right-handed alpha
Helix 11
AB2
A
502 505Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 8DCE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
125 129parallel
Strand 3
H
91 98anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
57 59anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
125 129parallel
Strand 3
H
91 98anti-parallel
Strand 4
H
118 121anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
165 168first strand
Strand 2
H
261 265parallel
Strand 3
H
242 249anti-parallel
Strand 4
H
191 196anti-parallel
Strand 5
H
203 206anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
165 168first strand
Strand 2
H
261 265parallel
Strand 3
H
242 249anti-parallel
Strand 4
H
255 257anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
174 179first strand
Strand 2
H
228 233anti-parallel
Strand 3
H
220 225anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 358first strand
Strand 2
A
394 403anti-parallel
Strand 3
A
507 516anti-parallel
Strand 4
A
431 437anti-parallel
Strand 5
A
376 380anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 363first strand
Strand 2
A
524 526parallel
Strand 3
A
391 392anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 454first strand
Strand 2
A
492 494anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 474first strand
Strand 2
A
488 489anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il