Analysis of interatomic Contacts of Structural Units in PDB entry:
8DCK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DCK entry

There are 12 chains in PDB entry 8DCK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 8	TYR 702
B	LYS 137	SER 706
C	LEU 29	MET 65
D	SER 9	LEU 77
I	ASP 8	TYR 702
J	LYS 137	SER 706
K	LEU 29	MET 65
L	SER 9	LEU 77
E	ASP 8	TYR 702
F	LYS 137	SER 706
G	LEU 29	MET 65
H	SER 9	LEU 77

There are180 helices in PDB entry 8DCK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	21	Right-handed alpha
Helix 2	AA2	A	26	35	Right-handed alpha
Helix 3	AA3	A	42	53	Right-handed alpha
Helix 4	AA4	A	65	69	Right-handed 310
Helix 5	AA5	A	111	117	Right-handed alpha
Helix 6	AA6	A	139	141	Right-handed 310
Helix 7	AA7	A	142	150	Right-handed alpha
Helix 8	AA8	A	150	181	Right-handed alpha
Helix 9	AA9	A	188	237	Right-handed alpha
Helix 10	AB1	A	239	246	Right-handed alpha
Helix 11	AB2	A	247	266	Right-handed alpha
Helix 12	AB3	A	269	278	Right-handed alpha
Helix 13	AB4	A	279	290	Right-handed alpha
Helix 14	AB5	A	291	293	Right-handed 310
Helix 15	AB6	A	294	339	Right-handed alpha
Helix 16	AB7	A	339	346	Right-handed alpha
Helix 17	AB8	A	348	403	Right-handed alpha
Helix 18	AB9	A	406	430	Right-handed alpha
Helix 19	AC1	A	430	449	Right-handed alpha
Helix 20	AC2	A	507	516	Right-handed alpha
Helix 21	AC3	A	537	544	Right-handed alpha
Helix 22	AC4	A	558	564	Right-handed alpha
Helix 23	AC5	A	572	582	Right-handed alpha
Helix 24	AC6	A	584	590	Right-handed alpha
Helix 25	AC7	A	593	597	Right-handed 310
Helix 26	AC8	A	600	604	Right-handed 310
Helix 27	AC9	A	607	621	Right-handed alpha
Helix 28	AD1	A	640	652	Right-handed alpha
Helix 29	AD2	A	663	667	Right-handed 310
Helix 30	AD3	A	686	692	Right-handed alpha
Helix 31	AD4	A	696	702	Right-handed alpha
Helix 32	AD5	B	142	150	Right-handed alpha
Helix 33	AD6	B	150	182	Right-handed alpha
Helix 34	AD7	B	188	237	Right-handed alpha
Helix 35	AD8	B	239	245	Right-handed alpha
Helix 36	AD9	B	247	266	Right-handed alpha
Helix 37	AE1	B	269	278	Right-handed alpha
Helix 38	AE2	B	280	290	Right-handed alpha
Helix 39	AE3	B	290	339	Right-handed alpha
Helix 40	AE4	B	339	346	Right-handed alpha
Helix 41	AE5	B	349	403	Right-handed alpha
Helix 42	AE6	B	406	429	Right-handed alpha
Helix 43	AE7	B	430	449	Right-handed alpha
Helix 44	AE8	B	507	516	Right-handed alpha
Helix 45	AE9	B	537	544	Right-handed alpha
Helix 46	AF1	B	558	564	Right-handed alpha
Helix 47	AF2	B	571	582	Right-handed alpha
Helix 48	AF3	B	584	591	Right-handed alpha
Helix 49	AF4	B	593	597	Right-handed 310
Helix 50	AF5	B	607	621	Right-handed alpha
Helix 51	AF6	B	637	652	Right-handed alpha
Helix 52	AF7	B	686	692	Right-handed alpha
Helix 53	AF8	B	696	706	Right-handed alpha
Helix 54	AF9	C	34	39	Right-handed alpha
Helix 55	AG1	C	42	49	Right-handed alpha
Helix 56	AG2	C	58	65	Right-handed alpha
Helix 57	AG3	D	10	24	Right-handed alpha
Helix 58	AG4	D	35	40	Right-handed alpha
Helix 59	AG5	D	43	51	Right-handed alpha
Helix 60	AG6	D	55	77	Right-handed alpha
Helix 61	AG7	I	9	21	Right-handed alpha
Helix 62	AG8	I	26	35	Right-handed alpha
Helix 63	AG9	I	42	53	Right-handed alpha
Helix 64	AH1	I	65	69	Right-handed 310
Helix 65	AH2	I	111	117	Right-handed alpha
Helix 66	AH3	I	139	141	Right-handed 310
Helix 67	AH4	I	142	150	Right-handed alpha
Helix 68	AH5	I	150	181	Right-handed alpha
Helix 69	AH6	I	188	237	Right-handed alpha
Helix 70	AH7	I	239	246	Right-handed alpha
Helix 71	AH8	I	247	266	Right-handed alpha
Helix 72	AH9	I	269	278	Right-handed alpha
Helix 73	AI1	I	279	290	Right-handed alpha
Helix 74	AI2	I	291	293	Right-handed 310
Helix 75	AI3	I	294	339	Right-handed alpha
Helix 76	AI4	I	339	346	Right-handed alpha
Helix 77	AI5	I	348	403	Right-handed alpha
Helix 78	AI6	I	406	430	Right-handed alpha
Helix 79	AI7	I	430	449	Right-handed alpha
Helix 80	AI8	I	507	516	Right-handed alpha
Helix 81	AI9	I	537	544	Right-handed alpha
Helix 82	AJ1	I	558	564	Right-handed alpha
Helix 83	AJ2	I	572	582	Right-handed alpha
Helix 84	AJ3	I	584	590	Right-handed alpha
Helix 85	AJ4	I	593	597	Right-handed 310
Helix 86	AJ5	I	600	604	Right-handed 310
Helix 87	AJ6	I	607	621	Right-handed alpha
Helix 88	AJ7	I	640	652	Right-handed alpha
Helix 89	AJ8	I	663	667	Right-handed 310
Helix 90	AJ9	I	686	692	Right-handed alpha
Helix 91	AK1	I	696	702	Right-handed alpha
Helix 92	AK2	J	142	150	Right-handed alpha
Helix 93	AK3	J	150	182	Right-handed alpha
Helix 94	AK4	J	188	237	Right-handed alpha
Helix 95	AK5	J	239	245	Right-handed alpha
Helix 96	AK6	J	247	266	Right-handed alpha
Helix 97	AK7	J	269	278	Right-handed alpha
Helix 98	AK8	J	280	290	Right-handed alpha
Helix 99	AK9	J	290	339	Right-handed alpha
Helix 100	AL1	J	339	346	Right-handed alpha
Helix 101	AL2	J	349	403	Right-handed alpha
Helix 102	AL3	J	406	429	Right-handed alpha
Helix 103	AL4	J	430	449	Right-handed alpha
Helix 104	AL5	J	507	516	Right-handed alpha
Helix 105	AL6	J	537	544	Right-handed alpha
Helix 106	AL7	J	558	564	Right-handed alpha
Helix 107	AL8	J	571	582	Right-handed alpha
Helix 108	AL9	J	584	591	Right-handed alpha
Helix 109	AM1	J	593	597	Right-handed 310
Helix 110	AM2	J	607	621	Right-handed alpha
Helix 111	AM3	J	637	652	Right-handed alpha
Helix 112	AM4	J	686	692	Right-handed alpha
Helix 113	AM5	J	696	706	Right-handed alpha
Helix 114	AM6	K	34	39	Right-handed alpha
Helix 115	AM7	K	42	49	Right-handed alpha
Helix 116	AM8	K	58	65	Right-handed alpha
Helix 117	AM9	L	10	24	Right-handed alpha
Helix 118	AN1	L	35	40	Right-handed alpha
Helix 119	AN2	L	43	51	Right-handed alpha
Helix 120	AN3	L	55	77	Right-handed alpha
Helix 121	AN4	E	9	21	Right-handed alpha
Helix 122	AN5	E	26	35	Right-handed alpha
Helix 123	AN6	E	42	53	Right-handed alpha
Helix 124	AN7	E	65	69	Right-handed 310
Helix 125	AN8	E	111	117	Right-handed alpha
Helix 126	AN9	E	139	141	Right-handed 310
Helix 127	AO1	E	142	150	Right-handed alpha
Helix 128	AO2	E	150	181	Right-handed alpha
Helix 129	AO3	E	188	237	Right-handed alpha
Helix 130	AO4	E	239	246	Right-handed alpha
Helix 131	AO5	E	247	266	Right-handed alpha
Helix 132	AO6	E	269	278	Right-handed alpha
Helix 133	AO7	E	279	290	Right-handed alpha
Helix 134	AO8	E	291	293	Right-handed 310
Helix 135	AO9	E	294	339	Right-handed alpha
Helix 136	AP1	E	339	346	Right-handed alpha
Helix 137	AP2	E	348	403	Right-handed alpha
Helix 138	AP3	E	406	430	Right-handed alpha
Helix 139	AP4	E	430	449	Right-handed alpha
Helix 140	AP5	E	507	516	Right-handed alpha
Helix 141	AP6	E	537	544	Right-handed alpha
Helix 142	AP7	E	558	564	Right-handed alpha
Helix 143	AP8	E	572	582	Right-handed alpha
Helix 144	AP9	E	584	590	Right-handed alpha
Helix 145	AQ1	E	593	597	Right-handed 310
Helix 146	AQ2	E	600	604	Right-handed 310
Helix 147	AQ3	E	607	621	Right-handed alpha
Helix 148	AQ4	E	640	652	Right-handed alpha
Helix 149	AQ5	E	663	667	Right-handed 310
Helix 150	AQ6	E	686	692	Right-handed alpha
Helix 151	AQ7	E	696	702	Right-handed alpha
Helix 152	AQ8	F	142	150	Right-handed alpha
Helix 153	AQ9	F	150	182	Right-handed alpha
Helix 154	AR1	F	188	237	Right-handed alpha
Helix 155	AR2	F	239	245	Right-handed alpha
Helix 156	AR3	F	247	266	Right-handed alpha
Helix 157	AR4	F	269	278	Right-handed alpha
Helix 158	AR5	F	280	290	Right-handed alpha
Helix 159	AR6	F	290	339	Right-handed alpha
Helix 160	AR7	F	339	346	Right-handed alpha
Helix 161	AR8	F	349	403	Right-handed alpha
Helix 162	AR9	F	406	429	Right-handed alpha
Helix 163	AS1	F	430	449	Right-handed alpha
Helix 164	AS2	F	507	516	Right-handed alpha
Helix 165	AS3	F	537	544	Right-handed alpha
Helix 166	AS4	F	558	564	Right-handed alpha
Helix 167	AS5	F	571	582	Right-handed alpha
Helix 168	AS6	F	584	591	Right-handed alpha
Helix 169	AS7	F	593	597	Right-handed 310
Helix 170	AS8	F	607	621	Right-handed alpha
Helix 171	AS9	F	637	652	Right-handed alpha
Helix 172	AT1	F	686	692	Right-handed alpha
Helix 173	AT2	F	696	706	Right-handed alpha
Helix 174	AT3	G	34	39	Right-handed alpha
Helix 175	AT4	G	42	49	Right-handed alpha
Helix 176	AT5	G	58	65	Right-handed alpha
Helix 177	AT6	H	10	24	Right-handed alpha
Helix 178	AT7	H	35	40	Right-handed alpha
Helix 179	AT8	H	43	51	Right-handed alpha
Helix 180	AT9	H	55	77	Right-handed alpha

There are 21 sheets in PDB entry 8DCK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	61	first strand
Strand 2	A	121	126	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	76	first strand
Strand 2	A	84	89	anti-parallel
Strand 3	A	95	100	anti-parallel
Strand 4	A	107	110	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	485	492	first strand
Strand 2	A	468	475	anti-parallel
Strand 3	A	523	528	anti-parallel
Strand 4	A	531	532	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	545	548	first strand
Strand 2	A	626	630	parallel
Strand 3	A	656	660	parallel
Strand 4	A	498	502	parallel
Strand 5	A	672	677	parallel
Strand 6	A	680	683	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	488	first strand
Strand 2	B	468	475	anti-parallel
Strand 3	B	491	492	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	488	first strand
Strand 2	B	468	475	anti-parallel
Strand 3	B	523	528	anti-parallel
Strand 4	B	531	532	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	545	548	first strand
Strand 2	B	626	630	parallel
Strand 3	B	656	660	parallel
Strand 4	B	498	502	parallel
Strand 5	B	672	677	parallel
Strand 6	B	680	685	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	56	61	first strand
Strand 2	I	121	126	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	74	76	first strand
Strand 2	I	84	89	anti-parallel
Strand 3	I	95	100	anti-parallel
Strand 4	I	107	110	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	485	492	first strand
Strand 2	I	468	475	anti-parallel
Strand 3	I	523	528	anti-parallel
Strand 4	I	531	532	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	545	548	first strand
Strand 2	I	626	630	parallel
Strand 3	I	656	660	parallel
Strand 4	I	498	502	parallel
Strand 5	I	672	677	parallel
Strand 6	I	680	683	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	485	488	first strand
Strand 2	J	468	475	anti-parallel
Strand 3	J	491	492	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	485	488	first strand
Strand 2	J	468	475	anti-parallel
Strand 3	J	523	528	anti-parallel
Strand 4	J	531	532	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	545	548	first strand
Strand 2	J	626	630	parallel
Strand 3	J	656	660	parallel
Strand 4	J	498	502	parallel
Strand 5	J	672	677	parallel
Strand 6	J	680	685	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	61	first strand
Strand 2	E	121	126	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	76	first strand
Strand 2	E	84	89	anti-parallel
Strand 3	E	95	100	anti-parallel
Strand 4	E	107	110	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	485	492	first strand
Strand 2	E	468	475	anti-parallel
Strand 3	E	523	528	anti-parallel
Strand 4	E	531	532	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	545	548	first strand
Strand 2	E	626	630	parallel
Strand 3	E	656	660	parallel
Strand 4	E	498	502	parallel
Strand 5	E	672	677	parallel
Strand 6	E	680	683	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	485	488	first strand
Strand 2	F	468	475	anti-parallel
Strand 3	F	491	492	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	485	488	first strand
Strand 2	F	468	475	anti-parallel
Strand 3	F	523	528	anti-parallel
Strand 4	F	531	532	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	545	548	first strand
Strand 2	F	626	630	parallel
Strand 3	F	656	660	parallel
Strand 4	F	498	502	parallel
Strand 5	F	672	677	parallel
Strand 6	F	680	685	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DCK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DCK