Analysis of interatomic Contacts of Structural Units in PDB entry:
8DCR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DCR entry

There are 5 chains in PDB entry 8DCR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 3	ASN 340
N	ALA -1	SER 128
A	GLU 15	LEU 380
G	SER 8	LYS 64
R	MET 44	LEU 357

There are 26 helices in PDB entry 8DCR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	4	25	Right-handed alpha
Helix 2	AA2	B	29	34	Right-handed alpha
Helix 3	AA3	N	28	32	Right-handed 310
Helix 4	AA4	N	62	65	Right-handed 310
Helix 5	AA5	N	87	91	Right-handed 310
Helix 6	AA6	A	16	38	Right-handed alpha
Helix 7	AA7	A	220	225	Right-handed 310
Helix 8	AA8	A	250	264	Right-handed alpha
Helix 9	AA9	A	279	287	Right-handed alpha
Helix 10	AB1	A	298	303	Right-handed 310
Helix 11	AB2	A	318	339	Right-handed alpha
Helix 12	AB3	A	354	377	Right-handed alpha
Helix 13	AB4	G	9	22	Right-handed alpha
Helix 14	AB5	G	29	44	Right-handed alpha
Helix 15	AB6	G	55	59	Right-handed 310
Helix 16	AB7	R	45	69	Right-handed alpha
Helix 17	AB8	R	75	105	Right-handed alpha
Helix 18	AB9	R	109	145	Right-handed alpha
Helix 19	AC1	R	148	153	Right-handed alpha
Helix 20	AC2	R	154	179	Right-handed alpha
Helix 21	AC3	R	186	195	Right-handed alpha
Helix 22	AC4	R	204	216	Right-handed alpha
Helix 23	AC5	R	216	242	Right-handed alpha
Helix 24	AC6	R	248	314	Right-handed alpha
Helix 25	AC7	R	321	343	Right-handed alpha
Helix 26	AC8	R	346	357	Right-handed alpha

There are 10 sheets in PDB entry 8DCR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	17	25	anti-parallel
Strand 3	N	78	84	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	11	12	first strand
Strand 2	N	122	126	parallel
Strand 3	N	92	98	anti-parallel
Strand 4	N	34	39	anti-parallel
Strand 5	N	46	51	anti-parallel
Strand 6	N	58	60	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	200	first strand
Strand 2	A	203	209	anti-parallel
Strand 3	A	40	46	parallel
Strand 4	A	229	235	parallel
Strand 5	A	273	278	parallel
Strand 6	A	348	349	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DCR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DCR