Analysis of interatomic Contacts of Structural Units in PDB entry:
8DCX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DCX entry

There are 2 chains in PDB entry 8DCX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 26	ASP 1056
B	MET 326	MET 582

There are 42 helices in PDB entry 8DCX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	56	Right-handed alpha
Helix 2	AA2	A	64	68	Right-handed 310
Helix 3	AA3	A	88	92	Right-handed 310
Helix 4	AA4	A	108	122	Right-handed alpha
Helix 5	AA5	A	125	131	Right-handed 310
Helix 6	AA6	A	133	155	Right-handed alpha
Helix 7	AA7	A	159	167	Right-handed alpha
Helix 8	AA8	A	181	189	Right-handed 310
Helix 9	AA9	A	216	226	Right-handed alpha
Helix 10	AB1	A	272	280	Right-handed alpha
Helix 11	AB2	A	289	297	Right-handed alpha
Helix 12	AB3	A	326	330	Right-handed 310
Helix 13	AB4	A	488	494	Right-handed alpha
Helix 14	AB5	A	528	537	Right-handed alpha
Helix 15	AB6	A	544	554	Right-handed alpha
Helix 16	AB7	A	555	563	Right-handed 310
Helix 17	AB8	A	564	570	Right-handed alpha
Helix 18	AB9	A	576	589	Right-handed alpha
Helix 19	AC1	A	597	603	Right-handed 310
Helix 20	AC2	A	608	623	Right-handed alpha
Helix 21	AC3	A	624	638	Right-handed alpha
Helix 22	AC4	A	647	658	Right-handed alpha
Helix 23	AC5	A	660	673	Right-handed alpha
Helix 24	AC6	A	680	695	Right-handed alpha
Helix 25	AC7	A	697	718	Right-handed alpha
Helix 26	AC8	A	741	748	Right-handed alpha
Helix 27	AC9	A	807	828	Right-handed alpha
Helix 28	AD1	A	857	864	Right-handed alpha
Helix 29	AD2	A	875	885	Right-handed alpha
Helix 30	AD3	A	886	889	Right-handed 310
Helix 31	AD4	A	890	911	Right-handed alpha
Helix 32	AD5	A	957	965	Right-handed alpha
Helix 33	AD6	A	974	993	Right-handed alpha
Helix 34	AD7	A	994	1005	Right-handed alpha
Helix 35	AD8	A	1006	1009	Right-handed 310
Helix 36	AD9	A	1015	1018	Right-handed 310
Helix 37	AE1	A	1019	1026	Right-handed alpha
Helix 38	AE2	A	1031	1048	Right-handed alpha
Helix 39	AE3	B	339	347	Right-handed alpha
Helix 40	AE4	B	400	410	Right-handed alpha
Helix 41	AE5	B	454	516	Right-handed alpha
Helix 42	AE6	B	518	582	Right-handed alpha

There are 11 sheets in PDB entry 8DCX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	81	first strand
Strand 2	A	69	73	anti-parallel
Strand 3	A	100	102	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	211	first strand
Strand 2	A	190	196	anti-parallel
Strand 3	A	284	287	parallel
Strand 4	A	252	254	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	392	first strand
Strand 2	A	333	341	anti-parallel
Strand 3	A	472	476	anti-parallel
Strand 4	A	440	444	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	365	366	first strand
Strand 2	A	354	362	anti-parallel
Strand 3	A	401	408	anti-parallel
Strand 4	A	420	421	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	372	first strand
Strand 2	A	354	362	anti-parallel
Strand 3	A	401	408	anti-parallel
Strand 4	A	425	428	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	751	753	first strand
Strand 2	A	756	761	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	779	782	first strand
Strand 2	A	798	803	anti-parallel
Strand 3	A	845	849	anti-parallel
Strand 4	A	838	840	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	854	856	first strand
Strand 2	A	921	924	anti-parallel
Strand 3	A	929	931	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	355	first strand
Strand 2	B	426	427	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	358	first strand
Strand 2	B	369	373	anti-parallel
Strand 3	B	378	382	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	384	386	first strand
Strand 2	B	389	391	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DCX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DCX