Analysis of interatomic Contacts of Structural Units in PDB entry:
8DCY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DCY entry

There are 3 chains in PDB entry 8DCY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 2GLU 219
B
 ASP 1ARG 210
C
 MET 255PRO 516
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8DCY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 64Right-handed 310
Helix 2
AA2
A
86 90Right-handed 310
Helix 3
AA3
A
163 165Right-handed 310
Helix 4
AA4
A
195 200Right-handed alpha
Helix 5
AA5
A
208 211Right-handed 310
Helix 6
AA6
B
78 82Right-handed 310
Helix 7
AA7
B
120 125Right-handed alpha
Helix 8
AA8
B
181 186Right-handed alpha
Helix 9
AA9
C
260 276Right-handed alpha
Helix 10
AB1
C
286 295Right-handed alpha
Helix 11
AB2
C
300 313Right-handed alpha
Helix 12
AB3
C
373 377Right-handed alpha
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There are 13 sheets in PDB entry 8DCY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 6first strand
Strand 2
A
21 23anti-parallel
Strand 3
A
77 79anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
114 118parallel
Strand 3
A
91 97anti-parallel
Strand 4
A
34 39anti-parallel
Strand 5
A
46 51anti-parallel
Strand 6
A
57 59anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 131first strand
Strand 2
A
144 152anti-parallel
Strand 3
A
183 190anti-parallel
Strand 4
A
170 172anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 131first strand
Strand 2
A
144 152anti-parallel
Strand 3
A
183 190anti-parallel
Strand 4
A
176 177anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 161first strand
Strand 2
A
202 207anti-parallel
Strand 3
A
212 217anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
69 74anti-parallel
Strand 4
B
61 66anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
101 105parallel
Strand 3
B
83 88anti-parallel
Strand 4
B
33 37anti-parallel
Strand 5
B
44 48anti-parallel
Strand 6
B
52 53anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 117first strand
Strand 2
B
132 138anti-parallel
Strand 3
B
172 177anti-parallel
Strand 4
B
159 162anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 146first strand
Strand 2
B
190 196anti-parallel
Strand 3
B
204 209anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
318 319first strand
Strand 2
C
325 326anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
356 359first strand
Strand 2
C
364 367anti-parallel
Strand 3
C
443 447anti-parallel
Strand 4
C
436 439anti-parallel
Strand 5
C
469 474anti-parallel
Strand 6
C
417 422anti-parallel
Strand 7
C
407 412anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
378 379first strand
Strand 2
C
463 466anti-parallel
Strand 3
C
458 459anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
396 397first strand
Strand 2
C
506 511parallel
Strand 3
C
484 489anti-parallel
Strand 4
C
430 432anti-parallel
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