Analysis of interatomic Contacts of Structural Units in PDB entry:
8DD4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DD4 entry

There are 2 chains in PDB entry 8DD4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 19PHE 1059
B
 ASN 323LEU 598
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 8DD4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 54Right-handed alpha
Helix 2
AA2
A
58 62Right-handed 310
Helix 3
AA3
A
64 68Right-handed 310
Helix 4
AA4
A
108 122Right-handed alpha
Helix 5
AA5
A
124 130Right-handed alpha
Helix 6
AA6
A
133 155Right-handed alpha
Helix 7
AA7
A
159 167Right-handed alpha
Helix 8
AA8
A
178 183Right-handed alpha
Helix 9
AA9
A
216 229Right-handed alpha
Helix 10
AB1
A
266 269Right-handed 310
Helix 11
AB2
A
270 280Right-handed alpha
Helix 12
AB3
A
290 297Right-handed alpha
Helix 13
AB4
A
305 309Right-handed 310
Helix 14
AB5
A
326 330Right-handed 310
Helix 15
AB6
A
488 496Right-handed alpha
Helix 16
AB7
A
528 537Right-handed alpha
Helix 17
AB8
A
544 554Right-handed alpha
Helix 18
AB9
A
557 563Right-handed 310
Helix 19
AC1
A
564 572Right-handed alpha
Helix 20
AC2
A
577 589Right-handed alpha
Helix 21
AC3
A
594 600Right-handed alpha
Helix 22
AC4
A
601 603Right-handed 310
Helix 23
AC5
A
608 623Right-handed alpha
Helix 24
AC6
A
624 631Right-handed alpha
Helix 25
AC7
A
631 638Right-handed alpha
Helix 26
AC8
A
647 658Right-handed alpha
Helix 27
AC9
A
660 674Right-handed alpha
Helix 28
AD1
A
680 696Right-handed alpha
Helix 29
AD2
A
698 721Right-handed alpha
Helix 30
AD3
A
727 739Right-handed alpha
Helix 31
AD4
A
741 748Right-handed alpha
Helix 32
AD5
A
807 828Right-handed alpha
Helix 33
AD6
A
857 865Right-handed alpha
Helix 34
AD7
A
875 885Right-handed alpha
Helix 35
AD8
A
889 912Right-handed alpha
Helix 36
AD9
A
940 944Right-handed 310
Helix 37
AE1
A
957 965Right-handed alpha
Helix 38
AE2
A
974 994Right-handed alpha
Helix 39
AE3
A
994 1005Right-handed alpha
Helix 40
AE4
A
1006 1009Right-handed 310
Helix 41
AE5
A
1015 1026Right-handed alpha
Helix 42
AE6
A
1031 1046Right-handed alpha
Helix 43
AE7
B
339 347Right-handed alpha
Helix 44
AE8
B
385 389Right-handed 310
Helix 45
AE9
B
400 410Right-handed alpha
Helix 46
AF1
B
430 437Right-handed alpha
Helix 47
AF2
B
442 504Right-handed alpha
Helix 48
AF3
B
508 516Right-handed alpha
Helix 49
AF4
B
517 588Right-handed alpha
Helix 50
AF5
B
591 596Right-handed alpha
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There are 10 sheets in PDB entry 8DD4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 36first strand
Strand 2
A
20 25anti-parallel
Strand 3
A
98 102parallel
Strand 4
A
69 71anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 212first strand
Strand 2
A
189 196anti-parallel
Strand 3
A
284 289parallel
Strand 4
A
250 254anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 340first strand
Strand 2
A
382 392anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
353 362anti-parallel
Strand 3
A
376 377anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
365 366first strand
Strand 2
A
353 362anti-parallel
Strand 3
A
401 410anti-parallel
Strand 4
A
418 428anti-parallel
Strand 5
A
446 447anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
439 444first strand
Strand 2
A
472 477anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
751 752first strand
Strand 2
A
760 761anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
779 784first strand
Strand 2
A
796 803anti-parallel
Strand 3
A
845 849anti-parallel
Strand 4
A
838 840anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
854 856first strand
Strand 2
A
921 924anti-parallel
Strand 3
A
929 931anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 358first strand
Strand 2
B
369 374anti-parallel
Strand 3
B
377 382anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il