Analysis of interatomic Contacts of Structural Units in PDB entry:
8DD7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DD7 entry

There are 2 chains in PDB entry 8DD7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3THR 518
B
 MET 1CYS 1219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 8DD7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 28Right-handed alpha
Helix 2
AA2
A
53 75Right-handed alpha
Helix 3
AA3
A
87 99Right-handed alpha
Helix 4
AA4
A
111 113Right-handed 310
Helix 5
AA5
A
114 128Right-handed alpha
Helix 6
AA6
A
142 151Right-handed alpha
Helix 7
AA7
A
157 169Right-handed alpha
Helix 8
AA8
A
179 183Right-handed 310
Helix 9
AA9
A
189 196Right-handed alpha
Helix 10
AB1
A
204 209Right-handed 310
Helix 11
AB2
A
213 219Right-handed 310
Helix 12
AB3
A
226 246Right-handed alpha
Helix 13
AB4
A
251 256Right-handed alpha
Helix 14
AB5
A
267 272Right-handed alpha
Helix 15
AB6
A
276 294Right-handed alpha
Helix 16
AB7
A
309 321Right-handed alpha
Helix 17
AB8
A
346 355Right-handed alpha
Helix 18
AB9
A
360 373Right-handed alpha
Helix 19
AC1
A
377 390Right-handed alpha
Helix 20
AC2
A
396 408Right-handed alpha
Helix 21
AC3
A
412 424Right-handed alpha
Helix 22
AC4
A
439 448Right-handed alpha
Helix 23
AC5
A
451 458Right-handed alpha
Helix 24
AC6
A
471 475Right-handed 310
Helix 25
AC7
A
476 484Right-handed alpha
Helix 26
AC8
A
497 517Right-handed alpha
Helix 27
AC9
B
3 5Right-handed 310
Helix 28
AD1
B
6 17Right-handed alpha
Helix 29
AD2
B
30 44Right-handed alpha
Helix 30
AD3
B
50 60Right-handed alpha
Helix 31
AD4
B
60 73Right-handed alpha
Helix 32
AD5
B
75 90Right-handed alpha
Helix 33
AD6
B
92 96Right-handed 310
Helix 34
AD7
B
98 103Right-handed alpha
Helix 35
AD8
B
105 127Right-handed alpha
Helix 36
AD9
B
128 144Right-handed alpha
Helix 37
AE1
B
150 170Right-handed alpha
Helix 38
AE2
B
171 177Right-handed alpha
Helix 39
AE3
B
184 202Right-handed alpha
Helix 40
AE4
B
203 214Right-handed alpha
Helix 41
AE5
B
216 219Right-handed 310
Helix 42
AE6
B
220 232Right-handed alpha
Helix 43
AE7
B
236 248Right-handed alpha
Helix 44
AE8
B
546 571Right-handed alpha
Helix 45
AE9
B
577 609Right-handed alpha
Helix 46
AF1
B
617 635Right-handed alpha
Helix 47
AF2
B
638 642Right-handed 310
Helix 48
AF3
B
647 669Right-handed alpha
Helix 49
AF4
B
676 703Right-handed alpha
Helix 50
AF5
B
707 723Right-handed alpha
Helix 51
AF6
B
729 737Right-handed alpha
Helix 52
AF7
B
744 766Right-handed alpha
Helix 53
AF8
B
775 780Right-handed alpha
Helix 54
AF9
B
786 798Right-handed alpha
Helix 55
AG1
B
798 803Right-handed alpha
Helix 56
AG2
B
806 819Right-handed alpha
Helix 57
AG3
B
829 843Right-handed alpha
Helix 58
AG4
B
850 855Right-handed alpha
Helix 59
AG5
B
858 863Right-handed alpha
Helix 60
AG6
B
990 1002Right-handed alpha
Helix 61
AG7
B
1005 1018Right-handed alpha
Helix 62
AG8
B
1019 1028Right-handed alpha
Helix 63
AG9
B
1039 1047Right-handed alpha
Helix 64
AH1
B
1058 1063Right-handed alpha
Helix 65
AH2
B
1064 1066Right-handed 310
Helix 66
AH3
B
1067 1077Right-handed alpha
Helix 67
AH4
B
1102 1108Right-handed alpha
Helix 68
AH5
B
1210 1219Right-handed alpha
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There are 2 sheets in PDB entry 8DD7. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
35 41parallel
Strand 3
A
6 10parallel
Strand 4
A
101 107parallel
Strand 5
A
131 135parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 21first strand
Strand 2
B
24 27anti-parallel
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