Analysis of interatomic Contacts of Structural Units in PDB entry:
8DDA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DDA entry

There are 4 chains in PDB entry 8DDA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 1	ASN 430
B	ALA 2	THR 428
C	ALA 2	ILE 427
D	LYS 1	LYS 77

There are 86 helices in PDB entry 8DDA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	31	Right-handed alpha
Helix 2	AA2	A	46	53	Right-handed alpha
Helix 3	AA3	A	103	107	Right-handed 310
Helix 4	AA4	A	115	117	Right-handed 310
Helix 5	AA5	A	130	151	Right-handed alpha
Helix 6	AA6	A	155	160	Right-handed 310
Helix 7	AA7	A	162	166	Right-handed 310
Helix 8	AA8	A	168	185	Right-handed alpha
Helix 9	AA9	A	189	193	Right-handed 310
Helix 10	AB1	A	203	214	Right-handed alpha
Helix 11	AB2	A	222	224	Right-handed 310
Helix 12	AB3	A	225	233	Right-handed alpha
Helix 13	AB4	A	244	248	Right-handed alpha
Helix 14	AB5	A	258	265	Right-handed alpha
Helix 15	AB6	A	272	277	Right-handed alpha
Helix 16	AB7	A	278	281	Right-handed 310
Helix 17	AB8	A	299	308	Right-handed alpha
Helix 18	AB9	A	380	384	Right-handed 310
Helix 19	AC1	A	385	398	Right-handed alpha
Helix 20	AC2	A	400	406	Right-handed alpha
Helix 21	AC3	A	412	416	Right-handed 310
Helix 22	AC4	A	419	424	Right-handed alpha
Helix 23	AC5	B	21	31	Right-handed alpha
Helix 24	AC6	B	46	53	Right-handed alpha
Helix 25	AC7	B	115	117	Right-handed 310
Helix 26	AC8	B	130	151	Right-handed alpha
Helix 27	AC9	B	155	160	Right-handed 310
Helix 28	AD1	B	162	166	Right-handed 310
Helix 29	AD2	B	168	185	Right-handed alpha
Helix 30	AD3	B	189	193	Right-handed 310
Helix 31	AD4	B	203	214	Right-handed alpha
Helix 32	AD5	B	222	224	Right-handed 310
Helix 33	AD6	B	225	233	Right-handed alpha
Helix 34	AD7	B	244	248	Right-handed alpha
Helix 35	AD8	B	258	265	Right-handed alpha
Helix 36	AD9	B	272	277	Right-handed alpha
Helix 37	AE1	B	278	281	Right-handed 310
Helix 38	AE2	B	299	307	Right-handed alpha
Helix 39	AE3	B	380	384	Right-handed 310
Helix 40	AE4	B	385	398	Right-handed alpha
Helix 41	AE5	B	400	406	Right-handed alpha
Helix 42	AE6	B	412	416	Right-handed 310
Helix 43	AE7	B	419	424	Right-handed alpha
Helix 44	AE8	C	21	31	Right-handed alpha
Helix 45	AE9	C	46	53	Right-handed alpha
Helix 46	AF1	C	74	78	Right-handed 310
Helix 47	AF2	C	115	117	Right-handed 310
Helix 48	AF3	C	130	151	Right-handed alpha
Helix 49	AF4	C	155	160	Right-handed 310
Helix 50	AF5	C	162	166	Right-handed 310
Helix 51	AF6	C	168	185	Right-handed alpha
Helix 52	AF7	C	189	193	Right-handed 310
Helix 53	AF8	C	203	214	Right-handed alpha
Helix 54	AF9	C	222	224	Right-handed 310
Helix 55	AG1	C	225	233	Right-handed alpha
Helix 56	AG2	C	244	248	Right-handed alpha
Helix 57	AG3	C	258	265	Right-handed alpha
Helix 58	AG4	C	272	277	Right-handed alpha
Helix 59	AG5	C	278	281	Right-handed 310
Helix 60	AG6	C	299	308	Right-handed alpha
Helix 61	AG7	C	380	384	Right-handed 310
Helix 62	AG8	C	385	398	Right-handed alpha
Helix 63	AG9	C	400	406	Right-handed alpha
Helix 64	AH1	C	412	416	Right-handed 310
Helix 65	AH2	C	419	424	Right-handed alpha
Helix 66	AH3	D	21	31	Right-handed alpha
Helix 67	AH4	D	46	53	Right-handed alpha
Helix 68	AH5	D	115	117	Right-handed 310
Helix 69	AH6	D	130	151	Right-handed alpha
Helix 70	AH7	D	155	160	Right-handed 310
Helix 71	AH8	D	162	166	Right-handed 310
Helix 72	AH9	D	168	185	Right-handed alpha
Helix 73	AI1	D	189	193	Right-handed 310
Helix 74	AI2	D	203	214	Right-handed alpha
Helix 75	AI3	D	222	224	Right-handed 310
Helix 76	AI4	D	225	233	Right-handed alpha
Helix 77	AI5	D	244	248	Right-handed alpha
Helix 78	AI6	D	258	265	Right-handed alpha
Helix 79	AI7	D	272	277	Right-handed alpha
Helix 80	AI8	D	278	281	Right-handed 310
Helix 81	AI9	D	299	307	Right-handed alpha
Helix 82	AJ1	D	380	384	Right-handed 310
Helix 83	AJ2	D	385	398	Right-handed alpha
Helix 84	AJ3	D	400	406	Right-handed alpha
Helix 85	AJ4	D	412	416	Right-handed 310
Helix 86	AJ5	D	419	424	Right-handed alpha

There are 12 sheets in PDB entry 8DDA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	34	37	parallel
Strand 3	A	3	6	parallel
Strand 4	A	66	68	parallel
Strand 5	A	83	86	parallel
Strand 6	A	110	113	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	220	first strand
Strand 2	A	238	243	parallel
Strand 3	A	196	200	parallel
Strand 4	A	283	286	parallel
Strand 5	A	329	332	parallel
Strand 6	A	373	377	parallel
Strand 7	A	355	357	anti-parallel
Strand 8	A	363	365	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	251	first strand
Strand 2	A	269	271	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	B	34	37	parallel
Strand 3	B	3	6	parallel
Strand 4	B	66	71	parallel
Strand 5	B	83	87	parallel
Strand 6	B	110	113	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	220	first strand
Strand 2	B	238	243	parallel
Strand 3	B	196	200	parallel
Strand 4	B	283	286	parallel
Strand 5	B	329	332	parallel
Strand 6	B	373	377	parallel
Strand 7	B	355	357	anti-parallel
Strand 8	B	363	365	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	251	first strand
Strand 2	B	269	271	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	57	first strand
Strand 2	C	34	37	parallel
Strand 3	C	3	6	parallel
Strand 4	C	66	71	parallel
Strand 5	C	83	87	parallel
Strand 6	C	110	113	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	218	220	first strand
Strand 2	C	238	243	parallel
Strand 3	C	196	200	parallel
Strand 4	C	283	286	parallel
Strand 5	C	329	332	parallel
Strand 6	C	373	377	parallel
Strand 7	C	355	357	anti-parallel
Strand 8	C	363	365	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	251	first strand
Strand 2	C	269	271	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	57	first strand
Strand 2	D	34	37	parallel
Strand 3	D	3	6	parallel
Strand 4	D	66	71	parallel
Strand 5	D	83	87	parallel
Strand 6	D	110	113	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	218	220	first strand
Strand 2	D	238	243	parallel
Strand 3	D	196	200	parallel
Strand 4	D	283	286	parallel
Strand 5	D	329	332	parallel
Strand 6	D	373	377	parallel
Strand 7	D	355	357	anti-parallel
Strand 8	D	363	365	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	249	251	first strand
Strand 2	D	269	271	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DDA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DDA