Analysis of interatomic Contacts of Structural Units in PDB entry:
8DDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DDP entry

There is 1 chain in PDB entry 8DDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 57VAL 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8DDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
126 133Right-handed alpha
Helix 2
AA2
A
138 140Right-handed 310
Helix 3
AA3
A
145 147Right-handed 310
Helix 4
AA4
A
169 173Right-handed 310
Helix 5
AA5
A
269 271Right-handed 310
Helix 6
AA6
A
276 278Right-handed 310
Helix 7
AA7
A
295 299Right-handed 310
Helix 8
AA8
A
331 335Right-handed 310
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There are 6 sheets in PDB entry 8DDP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 65first strand
Strand 2
A
68 72anti-parallel
Strand 3
A
92 99parallel
Strand 4
A
159 167anti-parallel
Strand 5
A
149 156anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 86first strand
Strand 2
A
191 198parallel
Strand 3
A
178 185anti-parallel
Strand 4
A
105 107anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
135 136anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 206first strand
Strand 2
A
209 211anti-parallel
Strand 3
A
232 236parallel
Strand 4
A
290 293anti-parallel
Strand 5
A
280 281anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 226first strand
Strand 2
A
319 326parallel
Strand 3
A
304 311anti-parallel
Strand 4
A
242 244anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 253first strand
Strand 2
A
265 267anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il