Analysis of interatomic Contacts of Structural Units in PDB entry:
8DDQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DDQ entry

There are 8 chains in PDB entry 8DDQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 129	SER 1243
E	UNK 1	UNK 17
B	ILE 129	SER 1243
F	UNK 1	UNK 17
C	ILE 129	SER 1243
G	UNK 1	UNK 17
D	ILE 129	SER 1243
H	UNK 1	UNK 17

There are198 helices in PDB entry 8DDQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	165	176	Right-handed alpha
Helix 2	AA2	A	201	216	Right-handed alpha
Helix 3	AA3	A	228	244	Right-handed alpha
Helix 4	AA4	A	257	259	Right-handed 310
Helix 5	AA5	A	279	283	Right-handed 310
Helix 6	AA6	A	308	321	Right-handed alpha
Helix 7	AA7	A	342	354	Right-handed alpha
Helix 8	AA8	A	366	368	Right-handed 310
Helix 9	AA9	A	369	378	Right-handed alpha
Helix 10	AB1	A	413	423	Right-handed alpha
Helix 11	AB2	A	439	450	Right-handed alpha
Helix 12	AB3	A	455	467	Right-handed alpha
Helix 13	AB4	A	468	476	Right-handed alpha
Helix 14	AB5	A	486	499	Right-handed alpha
Helix 15	AB6	A	500	510	Right-handed alpha
Helix 16	AB7	A	513	518	Right-handed alpha
Helix 17	AB8	A	519	528	Right-handed alpha
Helix 18	AB9	A	536	545	Right-handed alpha
Helix 19	AC1	A	556	569	Right-handed alpha
Helix 20	AC2	A	574	577	Right-handed 310
Helix 21	AC3	A	578	586	Right-handed alpha
Helix 22	AC4	A	636	648	Right-handed alpha
Helix 23	AC5	A	650	659	Right-handed alpha
Helix 24	AC6	A	663	685	Right-handed alpha
Helix 25	AC7	A	689	717	Right-handed alpha
Helix 26	AC8	A	717	725	Right-handed alpha
Helix 27	AC9	A	729	733	Right-handed 310
Helix 28	AD1	A	736	744	Right-handed alpha
Helix 29	AD2	A	746	751	Right-handed alpha
Helix 30	AD3	A	752	765	Right-handed alpha
Helix 31	AD4	A	774	783	Right-handed alpha
Helix 32	AD5	A	784	790	Right-handed 310
Helix 33	AD6	A	862	868	Right-handed alpha
Helix 34	AD7	A	870	895	Right-handed alpha
Helix 35	AD8	A	902	922	Right-handed alpha
Helix 36	AD9	A	930	939	Right-handed alpha
Helix 37	AE1	A	941	962	Right-handed alpha
Helix 38	AE2	A	964	985	Right-handed alpha
Helix 39	AE3	A	985	991	Right-handed alpha
Helix 40	AE4	A	995	1033	Right-handed alpha
Helix 41	AE5	A	1040	1046	Right-handed alpha
Helix 42	AE6	A	1047	1054	Right-handed alpha
Helix 43	AE7	A	1059	1064	Right-handed alpha
Helix 44	AE8	A	1089	1104	Right-handed alpha
Helix 45	AE9	A	1104	1117	Right-handed alpha
Helix 46	AF1	A	1117	1142	Right-handed alpha
Helix 47	AF2	A	1147	1150	Right-handed 310
Helix 48	AF3	A	1151	1158	Right-handed alpha
Helix 49	AF4	A	1186	1214	Right-handed alpha
Helix 50	AF5	A	1215	1240	Right-handed alpha
Helix 51	AF6	B	165	176	Right-handed alpha
Helix 52	AF7	B	201	216	Right-handed alpha
Helix 53	AF8	B	228	244	Right-handed alpha
Helix 54	AF9	B	257	259	Right-handed 310
Helix 55	AG1	B	308	321	Right-handed alpha
Helix 56	AG2	B	342	354	Right-handed alpha
Helix 57	AG3	B	366	368	Right-handed 310
Helix 58	AG4	B	369	378	Right-handed alpha
Helix 59	AG5	B	398	402	Right-handed alpha
Helix 60	AG6	B	413	423	Right-handed alpha
Helix 61	AG7	B	439	450	Right-handed alpha
Helix 62	AG8	B	455	467	Right-handed alpha
Helix 63	AG9	B	468	476	Right-handed alpha
Helix 64	AH1	B	486	498	Right-handed alpha
Helix 65	AH2	B	500	510	Right-handed alpha
Helix 66	AH3	B	513	518	Right-handed alpha
Helix 67	AH4	B	519	528	Right-handed alpha
Helix 68	AH5	B	536	545	Right-handed alpha
Helix 69	AH6	B	556	569	Right-handed alpha
Helix 70	AH7	B	578	587	Right-handed alpha
Helix 71	AH8	B	636	648	Right-handed alpha
Helix 72	AH9	B	650	659	Right-handed alpha
Helix 73	AI1	B	663	684	Right-handed alpha
Helix 74	AI2	B	689	717	Right-handed alpha
Helix 75	AI3	B	717	725	Right-handed alpha
Helix 76	AI4	B	729	733	Right-handed 310
Helix 77	AI5	B	736	744	Right-handed alpha
Helix 78	AI6	B	746	751	Right-handed alpha
Helix 79	AI7	B	752	765	Right-handed alpha
Helix 80	AI8	B	774	783	Right-handed alpha
Helix 81	AI9	B	784	790	Right-handed 310
Helix 82	AJ1	B	862	868	Right-handed alpha
Helix 83	AJ2	B	870	895	Right-handed alpha
Helix 84	AJ3	B	902	924	Right-handed alpha
Helix 85	AJ4	B	930	939	Right-handed alpha
Helix 86	AJ5	B	941	962	Right-handed alpha
Helix 87	AJ6	B	964	985	Right-handed alpha
Helix 88	AJ7	B	985	991	Right-handed alpha
Helix 89	AJ8	B	995	1033	Right-handed alpha
Helix 90	AJ9	B	1040	1046	Right-handed alpha
Helix 91	AK1	B	1047	1054	Right-handed alpha
Helix 92	AK2	B	1059	1064	Right-handed alpha
Helix 93	AK3	B	1089	1104	Right-handed alpha
Helix 94	AK4	B	1104	1117	Right-handed alpha
Helix 95	AK5	B	1117	1142	Right-handed alpha
Helix 96	AK6	B	1147	1150	Right-handed 310
Helix 97	AK7	B	1151	1158	Right-handed alpha
Helix 98	AK8	B	1186	1214	Right-handed alpha
Helix 99	AK9	B	1215	1240	Right-handed alpha
Helix 100	AL1	F	1	5	Right-handed 310
Helix 101	AL2	C	165	176	Right-handed alpha
Helix 102	AL3	C	201	216	Right-handed alpha
Helix 103	AL4	C	228	244	Right-handed alpha
Helix 104	AL5	C	257	259	Right-handed 310
Helix 105	AL6	C	308	321	Right-handed alpha
Helix 106	AL7	C	342	354	Right-handed alpha
Helix 107	AL8	C	366	368	Right-handed 310
Helix 108	AL9	C	369	379	Right-handed alpha
Helix 109	AM1	C	413	423	Right-handed alpha
Helix 110	AM2	C	439	450	Right-handed alpha
Helix 111	AM3	C	455	467	Right-handed alpha
Helix 112	AM4	C	468	476	Right-handed alpha
Helix 113	AM5	C	486	499	Right-handed alpha
Helix 114	AM6	C	500	510	Right-handed alpha
Helix 115	AM7	C	513	518	Right-handed alpha
Helix 116	AM8	C	519	528	Right-handed alpha
Helix 117	AM9	C	536	545	Right-handed alpha
Helix 118	AN1	C	556	569	Right-handed alpha
Helix 119	AN2	C	574	577	Right-handed 310
Helix 120	AN3	C	578	587	Right-handed alpha
Helix 121	AN4	C	636	648	Right-handed alpha
Helix 122	AN5	C	650	659	Right-handed alpha
Helix 123	AN6	C	663	685	Right-handed alpha
Helix 124	AN7	C	690	717	Right-handed alpha
Helix 125	AN8	C	717	725	Right-handed alpha
Helix 126	AN9	C	729	733	Right-handed 310
Helix 127	AO1	C	736	744	Right-handed alpha
Helix 128	AO2	C	746	751	Right-handed alpha
Helix 129	AO3	C	752	765	Right-handed alpha
Helix 130	AO4	C	774	783	Right-handed alpha
Helix 131	AO5	C	784	790	Right-handed 310
Helix 132	AO6	C	862	868	Right-handed alpha
Helix 133	AO7	C	870	895	Right-handed alpha
Helix 134	AO8	C	902	924	Right-handed alpha
Helix 135	AO9	C	930	939	Right-handed alpha
Helix 136	AP1	C	941	962	Right-handed alpha
Helix 137	AP2	C	964	985	Right-handed alpha
Helix 138	AP3	C	985	991	Right-handed alpha
Helix 139	AP4	C	995	1033	Right-handed alpha
Helix 140	AP5	C	1040	1046	Right-handed alpha
Helix 141	AP6	C	1047	1054	Right-handed alpha
Helix 142	AP7	C	1059	1064	Right-handed alpha
Helix 143	AP8	C	1089	1104	Right-handed alpha
Helix 144	AP9	C	1104	1116	Right-handed alpha
Helix 145	AQ1	C	1117	1142	Right-handed alpha
Helix 146	AQ2	C	1147	1150	Right-handed 310
Helix 147	AQ3	C	1151	1158	Right-handed alpha
Helix 148	AQ4	C	1186	1214	Right-handed alpha
Helix 149	AQ5	C	1215	1240	Right-handed alpha
Helix 150	AQ6	D	165	176	Right-handed alpha
Helix 151	AQ7	D	201	216	Right-handed alpha
Helix 152	AQ8	D	228	244	Right-handed alpha
Helix 153	AQ9	D	257	259	Right-handed 310
Helix 154	AR1	D	308	321	Right-handed alpha
Helix 155	AR2	D	342	354	Right-handed alpha
Helix 156	AR3	D	366	368	Right-handed 310
Helix 157	AR4	D	369	378	Right-handed alpha
Helix 158	AR5	D	398	402	Right-handed alpha
Helix 159	AR6	D	413	423	Right-handed alpha
Helix 160	AR7	D	439	450	Right-handed alpha
Helix 161	AR8	D	455	467	Right-handed alpha
Helix 162	AR9	D	468	476	Right-handed alpha
Helix 163	AS1	D	486	499	Right-handed alpha
Helix 164	AS2	D	500	510	Right-handed alpha
Helix 165	AS3	D	513	518	Right-handed alpha
Helix 166	AS4	D	519	528	Right-handed alpha
Helix 167	AS5	D	536	545	Right-handed alpha
Helix 168	AS6	D	556	569	Right-handed alpha
Helix 169	AS7	D	574	577	Right-handed 310
Helix 170	AS8	D	578	587	Right-handed alpha
Helix 171	AS9	D	636	648	Right-handed alpha
Helix 172	AT1	D	650	659	Right-handed alpha
Helix 173	AT2	D	663	685	Right-handed alpha
Helix 174	AT3	D	689	717	Right-handed alpha
Helix 175	AT4	D	717	725	Right-handed alpha
Helix 176	AT5	D	736	744	Right-handed alpha
Helix 177	AT6	D	746	751	Right-handed alpha
Helix 178	AT7	D	752	765	Right-handed alpha
Helix 179	AT8	D	774	783	Right-handed alpha
Helix 180	AT9	D	784	790	Right-handed 310
Helix 181	AU1	D	862	868	Right-handed alpha
Helix 182	AU2	D	870	895	Right-handed alpha
Helix 183	AU3	D	902	924	Right-handed alpha
Helix 184	AU4	D	930	939	Right-handed alpha
Helix 185	AU5	D	941	962	Right-handed alpha
Helix 186	AU6	D	964	985	Right-handed alpha
Helix 187	AU7	D	985	991	Right-handed alpha
Helix 188	AU8	D	995	1033	Right-handed alpha
Helix 189	AU9	D	1040	1046	Right-handed alpha
Helix 190	AV1	D	1047	1054	Right-handed alpha
Helix 191	AV2	D	1059	1064	Right-handed alpha
Helix 192	AV3	D	1089	1104	Right-handed alpha
Helix 193	AV4	D	1104	1117	Right-handed alpha
Helix 194	AV5	D	1117	1142	Right-handed alpha
Helix 195	AV6	D	1147	1150	Right-handed 310
Helix 196	AV7	D	1151	1158	Right-handed alpha
Helix 197	AV8	D	1186	1214	Right-handed alpha
Helix 198	AV9	D	1215	1240	Right-handed alpha

There are 7 sheets in PDB entry 8DDQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	137	first strand
Strand 2	E	7	8	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	275	first strand
Strand 2	A	141	147	parallel
Strand 3	A	154	161	anti-parallel
Strand 4	A	293	298	parallel
Strand 5	A	249	255	parallel
Strand 6	A	218	222	parallel
Strand 7	A	184	190	parallel
Strand 8	A	334	339	parallel
Strand 9	A	361	364	parallel
Strand 10	A	427	430	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	137	first strand
Strand 2	F	7	8	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	275	first strand
Strand 2	B	141	147	parallel
Strand 3	B	154	161	anti-parallel
Strand 4	B	293	298	parallel
Strand 5	B	249	255	parallel
Strand 6	B	218	222	parallel
Strand 7	B	184	190	parallel
Strand 8	B	334	339	parallel
Strand 9	B	361	364	parallel
Strand 10	B	427	430	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	137	first strand
Strand 2	G	7	11	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	275	first strand
Strand 2	C	141	147	parallel
Strand 3	C	154	161	anti-parallel
Strand 4	C	293	298	parallel
Strand 5	C	249	255	parallel
Strand 6	C	218	222	parallel
Strand 7	C	184	190	parallel
Strand 8	C	334	339	parallel
Strand 9	C	361	364	parallel
Strand 10	C	427	430	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	275	first strand
Strand 2	D	141	147	parallel
Strand 3	D	154	161	anti-parallel
Strand 4	D	293	298	parallel
Strand 5	D	249	255	parallel
Strand 6	D	218	222	parallel
Strand 7	D	184	190	parallel
Strand 8	D	334	339	parallel
Strand 9	D	361	364	parallel
Strand 10	D	427	430	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DDQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DDQ