Analysis of interatomic Contacts of Structural Units in PDB entry:
8DDU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DDU entry

There are 8 chains in PDB entry 8DDU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 129	SER 1243
E	UNK 1	UNK 17
B	ILE 129	SER 1243
F	UNK 1	UNK 17
C	ILE 129	SER 1243
G	UNK 1	UNK 17
D	ILE 129	SER 1243
H	UNK 1	UNK 17

There are188 helices in PDB entry 8DDU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	165	175	Right-handed alpha
Helix 2	AA2	A	201	216	Right-handed alpha
Helix 3	AA3	A	228	242	Right-handed alpha
Helix 4	AA4	A	257	259	Right-handed 310
Helix 5	AA5	A	279	283	Right-handed 310
Helix 6	AA6	A	308	321	Right-handed alpha
Helix 7	AA7	A	342	354	Right-handed alpha
Helix 8	AA8	A	369	379	Right-handed alpha
Helix 9	AA9	A	413	423	Right-handed alpha
Helix 10	AB1	A	439	453	Right-handed alpha
Helix 11	AB2	A	455	467	Right-handed alpha
Helix 12	AB3	A	468	475	Right-handed alpha
Helix 13	AB4	A	486	498	Right-handed alpha
Helix 14	AB5	A	500	510	Right-handed alpha
Helix 15	AB6	A	513	518	Right-handed alpha
Helix 16	AB7	A	519	528	Right-handed alpha
Helix 17	AB8	A	536	545	Right-handed alpha
Helix 18	AB9	A	556	569	Right-handed alpha
Helix 19	AC1	A	574	577	Right-handed 310
Helix 20	AC2	A	578	587	Right-handed alpha
Helix 21	AC3	A	636	648	Right-handed alpha
Helix 22	AC4	A	650	659	Right-handed alpha
Helix 23	AC5	A	663	685	Right-handed alpha
Helix 24	AC6	A	689	717	Right-handed alpha
Helix 25	AC7	A	717	727	Right-handed alpha
Helix 26	AC8	A	736	744	Right-handed alpha
Helix 27	AC9	A	746	751	Right-handed alpha
Helix 28	AD1	A	752	765	Right-handed alpha
Helix 29	AD2	A	774	783	Right-handed alpha
Helix 30	AD3	A	784	790	Right-handed 310
Helix 31	AD4	A	862	868	Right-handed alpha
Helix 32	AD5	A	870	895	Right-handed alpha
Helix 33	AD6	A	902	925	Right-handed alpha
Helix 34	AD7	A	930	939	Right-handed alpha
Helix 35	AD8	A	941	962	Right-handed alpha
Helix 36	AD9	A	964	985	Right-handed alpha
Helix 37	AE1	A	985	991	Right-handed alpha
Helix 38	AE2	A	997	1033	Right-handed alpha
Helix 39	AE3	A	1041	1054	Right-handed alpha
Helix 40	AE4	A	1089	1105	Right-handed alpha
Helix 41	AE5	A	1105	1117	Right-handed alpha
Helix 42	AE6	A	1118	1142	Right-handed alpha
Helix 43	AE7	A	1147	1150	Right-handed 310
Helix 44	AE8	A	1151	1161	Right-handed alpha
Helix 45	AE9	A	1162	1164	Right-handed 310
Helix 46	AF1	A	1186	1214	Right-handed alpha
Helix 47	AF2	A	1215	1240	Right-handed alpha
Helix 48	AF3	B	165	175	Right-handed alpha
Helix 49	AF4	B	201	216	Right-handed alpha
Helix 50	AF5	B	228	242	Right-handed alpha
Helix 51	AF6	B	257	259	Right-handed 310
Helix 52	AF7	B	279	283	Right-handed 310
Helix 53	AF8	B	308	321	Right-handed alpha
Helix 54	AF9	B	342	354	Right-handed alpha
Helix 55	AG1	B	369	379	Right-handed alpha
Helix 56	AG2	B	413	423	Right-handed alpha
Helix 57	AG3	B	439	453	Right-handed alpha
Helix 58	AG4	B	455	467	Right-handed alpha
Helix 59	AG5	B	468	475	Right-handed alpha
Helix 60	AG6	B	486	498	Right-handed alpha
Helix 61	AG7	B	500	510	Right-handed alpha
Helix 62	AG8	B	513	518	Right-handed alpha
Helix 63	AG9	B	519	528	Right-handed alpha
Helix 64	AH1	B	536	545	Right-handed alpha
Helix 65	AH2	B	556	569	Right-handed alpha
Helix 66	AH3	B	574	577	Right-handed 310
Helix 67	AH4	B	578	587	Right-handed alpha
Helix 68	AH5	B	636	648	Right-handed alpha
Helix 69	AH6	B	650	659	Right-handed alpha
Helix 70	AH7	B	663	685	Right-handed alpha
Helix 71	AH8	B	689	717	Right-handed alpha
Helix 72	AH9	B	717	727	Right-handed alpha
Helix 73	AI1	B	736	744	Right-handed alpha
Helix 74	AI2	B	746	751	Right-handed alpha
Helix 75	AI3	B	752	765	Right-handed alpha
Helix 76	AI4	B	774	783	Right-handed alpha
Helix 77	AI5	B	784	790	Right-handed 310
Helix 78	AI6	B	862	868	Right-handed alpha
Helix 79	AI7	B	870	895	Right-handed alpha
Helix 80	AI8	B	902	925	Right-handed alpha
Helix 81	AI9	B	930	939	Right-handed alpha
Helix 82	AJ1	B	941	962	Right-handed alpha
Helix 83	AJ2	B	964	985	Right-handed alpha
Helix 84	AJ3	B	985	991	Right-handed alpha
Helix 85	AJ4	B	997	1033	Right-handed alpha
Helix 86	AJ5	B	1041	1054	Right-handed alpha
Helix 87	AJ6	B	1089	1105	Right-handed alpha
Helix 88	AJ7	B	1105	1117	Right-handed alpha
Helix 89	AJ8	B	1118	1142	Right-handed alpha
Helix 90	AJ9	B	1147	1150	Right-handed 310
Helix 91	AK1	B	1151	1161	Right-handed alpha
Helix 92	AK2	B	1162	1164	Right-handed 310
Helix 93	AK3	B	1186	1214	Right-handed alpha
Helix 94	AK4	B	1215	1240	Right-handed alpha
Helix 95	AK5	C	165	175	Right-handed alpha
Helix 96	AK6	C	201	216	Right-handed alpha
Helix 97	AK7	C	228	242	Right-handed alpha
Helix 98	AK8	C	257	259	Right-handed 310
Helix 99	AK9	C	279	283	Right-handed 310
Helix 100	AL1	C	308	321	Right-handed alpha
Helix 101	AL2	C	342	354	Right-handed alpha
Helix 102	AL3	C	369	379	Right-handed alpha
Helix 103	AL4	C	413	423	Right-handed alpha
Helix 104	AL5	C	439	453	Right-handed alpha
Helix 105	AL6	C	455	467	Right-handed alpha
Helix 106	AL7	C	468	475	Right-handed alpha
Helix 107	AL8	C	486	498	Right-handed alpha
Helix 108	AL9	C	500	510	Right-handed alpha
Helix 109	AM1	C	513	518	Right-handed alpha
Helix 110	AM2	C	519	527	Right-handed alpha
Helix 111	AM3	C	536	545	Right-handed alpha
Helix 112	AM4	C	556	569	Right-handed alpha
Helix 113	AM5	C	574	577	Right-handed 310
Helix 114	AM6	C	578	587	Right-handed alpha
Helix 115	AM7	C	636	648	Right-handed alpha
Helix 116	AM8	C	650	659	Right-handed alpha
Helix 117	AM9	C	663	685	Right-handed alpha
Helix 118	AN1	C	689	717	Right-handed alpha
Helix 119	AN2	C	717	727	Right-handed alpha
Helix 120	AN3	C	736	744	Right-handed alpha
Helix 121	AN4	C	746	751	Right-handed alpha
Helix 122	AN5	C	752	765	Right-handed alpha
Helix 123	AN6	C	774	783	Right-handed alpha
Helix 124	AN7	C	784	790	Right-handed 310
Helix 125	AN8	C	862	868	Right-handed alpha
Helix 126	AN9	C	870	895	Right-handed alpha
Helix 127	AO1	C	902	925	Right-handed alpha
Helix 128	AO2	C	930	939	Right-handed alpha
Helix 129	AO3	C	941	962	Right-handed alpha
Helix 130	AO4	C	964	985	Right-handed alpha
Helix 131	AO5	C	985	991	Right-handed alpha
Helix 132	AO6	C	997	1033	Right-handed alpha
Helix 133	AO7	C	1041	1054	Right-handed alpha
Helix 134	AO8	C	1089	1105	Right-handed alpha
Helix 135	AO9	C	1105	1117	Right-handed alpha
Helix 136	AP1	C	1118	1142	Right-handed alpha
Helix 137	AP2	C	1147	1150	Right-handed 310
Helix 138	AP3	C	1151	1161	Right-handed alpha
Helix 139	AP4	C	1162	1164	Right-handed 310
Helix 140	AP5	C	1186	1214	Right-handed alpha
Helix 141	AP6	C	1215	1240	Right-handed alpha
Helix 142	AP7	D	165	175	Right-handed alpha
Helix 143	AP8	D	201	216	Right-handed alpha
Helix 144	AP9	D	228	242	Right-handed alpha
Helix 145	AQ1	D	257	259	Right-handed 310
Helix 146	AQ2	D	279	283	Right-handed 310
Helix 147	AQ3	D	308	321	Right-handed alpha
Helix 148	AQ4	D	342	354	Right-handed alpha
Helix 149	AQ5	D	369	379	Right-handed alpha
Helix 150	AQ6	D	413	423	Right-handed alpha
Helix 151	AQ7	D	439	453	Right-handed alpha
Helix 152	AQ8	D	455	467	Right-handed alpha
Helix 153	AQ9	D	468	475	Right-handed alpha
Helix 154	AR1	D	486	498	Right-handed alpha
Helix 155	AR2	D	500	510	Right-handed alpha
Helix 156	AR3	D	513	518	Right-handed alpha
Helix 157	AR4	D	519	528	Right-handed alpha
Helix 158	AR5	D	536	545	Right-handed alpha
Helix 159	AR6	D	556	569	Right-handed alpha
Helix 160	AR7	D	574	577	Right-handed 310
Helix 161	AR8	D	578	587	Right-handed alpha
Helix 162	AR9	D	636	648	Right-handed alpha
Helix 163	AS1	D	650	659	Right-handed alpha
Helix 164	AS2	D	663	685	Right-handed alpha
Helix 165	AS3	D	689	717	Right-handed alpha
Helix 166	AS4	D	717	727	Right-handed alpha
Helix 167	AS5	D	736	744	Right-handed alpha
Helix 168	AS6	D	746	751	Right-handed alpha
Helix 169	AS7	D	752	765	Right-handed alpha
Helix 170	AS8	D	774	783	Right-handed alpha
Helix 171	AS9	D	784	790	Right-handed 310
Helix 172	AT1	D	862	868	Right-handed alpha
Helix 173	AT2	D	870	895	Right-handed alpha
Helix 174	AT3	D	902	925	Right-handed alpha
Helix 175	AT4	D	930	939	Right-handed alpha
Helix 176	AT5	D	941	962	Right-handed alpha
Helix 177	AT6	D	964	985	Right-handed alpha
Helix 178	AT7	D	985	991	Right-handed alpha
Helix 179	AT8	D	997	1033	Right-handed alpha
Helix 180	AT9	D	1041	1054	Right-handed alpha
Helix 181	AU1	D	1089	1105	Right-handed alpha
Helix 182	AU2	D	1105	1117	Right-handed alpha
Helix 183	AU3	D	1118	1142	Right-handed alpha
Helix 184	AU4	D	1147	1150	Right-handed 310
Helix 185	AU5	D	1151	1161	Right-handed alpha
Helix 186	AU6	D	1162	1164	Right-handed 310
Helix 187	AU7	D	1186	1214	Right-handed alpha
Helix 188	AU8	D	1215	1240	Right-handed alpha

There are 8 sheets in PDB entry 8DDU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	134	first strand
Strand 2	E	10	11	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	275	first strand
Strand 2	A	141	147	parallel
Strand 3	A	154	161	anti-parallel
Strand 4	A	293	298	parallel
Strand 5	A	249	255	parallel
Strand 6	A	219	222	parallel
Strand 7	A	185	187	parallel
Strand 8	A	334	337	parallel
Strand 9	A	361	364	parallel
Strand 10	A	427	430	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	134	first strand
Strand 2	F	10	11	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	275	first strand
Strand 2	B	141	147	parallel
Strand 3	B	154	161	anti-parallel
Strand 4	B	293	298	parallel
Strand 5	B	249	255	parallel
Strand 6	B	219	222	parallel
Strand 7	B	185	187	parallel
Strand 8	B	334	337	parallel
Strand 9	B	361	364	parallel
Strand 10	B	427	430	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	134	first strand
Strand 2	G	10	11	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	275	first strand
Strand 2	C	141	147	parallel
Strand 3	C	154	161	anti-parallel
Strand 4	C	293	298	parallel
Strand 5	C	249	255	parallel
Strand 6	C	219	222	parallel
Strand 7	C	185	187	parallel
Strand 8	C	334	337	parallel
Strand 9	C	361	364	parallel
Strand 10	C	427	430	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	134	first strand
Strand 2	H	10	11	anti-parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	270	275	first strand
Strand 2	D	141	147	parallel
Strand 3	D	154	161	anti-parallel
Strand 4	D	293	298	parallel
Strand 5	D	249	255	parallel
Strand 6	D	219	222	parallel
Strand 7	D	185	187	parallel
Strand 8	D	334	337	parallel
Strand 9	D	361	364	parallel
Strand 10	D	427	430	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DDU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DDU