Analysis of interatomic Contacts of Structural Units in PDB entry:
8DDW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DDW entry

There are 10 chains in PDB entry 8DDW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 129	SER 1243
E	UNK 1	UNK 17
B	ILE 129	SER 1243
F	UNK 1	UNK 17
C	ILE 129	SER 1243
G	UNK 1	UNK 17
D	ILE 129	SER 1243
H	UNK 1	UNK 17
I	LEU 4	ASN 340
J	ALA 7	GLU 63

There are135 helices in PDB entry 8DDW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	165	176	Right-handed alpha
Helix 2	AA2	A	201	216	Right-handed alpha
Helix 3	AA3	A	228	242	Right-handed alpha
Helix 4	AA4	A	279	283	Right-handed 310
Helix 5	AA5	A	307	322	Right-handed alpha
Helix 6	AA6	A	342	354	Right-handed alpha
Helix 7	AA7	A	369	379	Right-handed alpha
Helix 8	AA8	A	398	402	Right-handed 310
Helix 9	AA9	A	413	423	Right-handed alpha
Helix 10	AB1	A	439	451	Right-handed alpha
Helix 11	AB2	A	455	467	Right-handed alpha
Helix 12	AB3	A	468	475	Right-handed alpha
Helix 13	AB4	A	486	498	Right-handed alpha
Helix 14	AB5	A	500	510	Right-handed alpha
Helix 15	AB6	A	513	518	Right-handed alpha
Helix 16	AB7	A	519	528	Right-handed alpha
Helix 17	AB8	A	536	545	Right-handed alpha
Helix 18	AB9	A	556	569	Right-handed alpha
Helix 19	AC1	A	578	587	Right-handed alpha
Helix 20	AC2	A	636	649	Right-handed alpha
Helix 21	AC3	A	650	659	Right-handed alpha
Helix 22	AC4	A	663	685	Right-handed alpha
Helix 23	AC5	A	689	717	Right-handed alpha
Helix 24	AC6	A	717	727	Right-handed alpha
Helix 25	AC7	A	729	733	Right-handed 310
Helix 26	AC8	A	736	744	Right-handed alpha
Helix 27	AC9	A	746	751	Right-handed alpha
Helix 28	AD1	A	752	761	Right-handed alpha
Helix 29	AD2	A	995	1006	Right-handed alpha
Helix 30	AD3	A	1110	1117	Right-handed alpha
Helix 31	AD4	A	1118	1142	Right-handed alpha
Helix 32	AD5	A	1186	1215	Right-handed alpha
Helix 33	AD6	A	1215	1240	Right-handed alpha
Helix 34	AD7	B	165	176	Right-handed alpha
Helix 35	AD8	B	201	216	Right-handed alpha
Helix 36	AD9	B	228	242	Right-handed alpha
Helix 37	AE1	B	257	259	Right-handed 310
Helix 38	AE2	B	308	321	Right-handed alpha
Helix 39	AE3	B	342	355	Right-handed alpha
Helix 40	AE4	B	369	379	Right-handed alpha
Helix 41	AE5	B	414	423	Right-handed alpha
Helix 42	AE6	B	439	451	Right-handed alpha
Helix 43	AE7	B	455	467	Right-handed alpha
Helix 44	AE8	B	468	475	Right-handed alpha
Helix 45	AE9	B	486	499	Right-handed alpha
Helix 46	AF1	B	500	510	Right-handed alpha
Helix 47	AF2	B	513	518	Right-handed alpha
Helix 48	AF3	B	519	527	Right-handed alpha
Helix 49	AF4	B	536	545	Right-handed alpha
Helix 50	AF5	B	556	569	Right-handed alpha
Helix 51	AF6	B	578	587	Right-handed alpha
Helix 52	AF7	B	636	648	Right-handed alpha
Helix 53	AF8	B	650	659	Right-handed alpha
Helix 54	AF9	B	663	685	Right-handed alpha
Helix 55	AG1	B	689	717	Right-handed alpha
Helix 56	AG2	B	718	727	Right-handed alpha
Helix 57	AG3	B	729	733	Right-handed 310
Helix 58	AG4	B	736	745	Right-handed alpha
Helix 59	AG5	B	746	752	Right-handed alpha
Helix 60	AG6	B	752	762	Right-handed alpha
Helix 61	AG7	B	995	1007	Right-handed alpha
Helix 62	AG8	B	1110	1117	Right-handed alpha
Helix 63	AG9	B	1118	1142	Right-handed alpha
Helix 64	AH1	B	1186	1214	Right-handed alpha
Helix 65	AH2	B	1215	1240	Right-handed alpha
Helix 66	AH3	F	2	6	Right-handed 310
Helix 67	AH4	C	165	175	Right-handed alpha
Helix 68	AH5	C	200	216	Right-handed alpha
Helix 69	AH6	C	227	244	Right-handed alpha
Helix 70	AH7	C	308	321	Right-handed alpha
Helix 71	AH8	C	344	355	Right-handed alpha
Helix 72	AH9	C	369	379	Right-handed alpha
Helix 73	AI1	C	397	401	Right-handed 310
Helix 74	AI2	C	413	423	Right-handed alpha
Helix 75	AI3	C	439	451	Right-handed alpha
Helix 76	AI4	C	455	467	Right-handed alpha
Helix 77	AI5	C	468	476	Right-handed alpha
Helix 78	AI6	C	486	497	Right-handed alpha
Helix 79	AI7	C	500	510	Right-handed alpha
Helix 80	AI8	C	513	518	Right-handed alpha
Helix 81	AI9	C	519	528	Right-handed alpha
Helix 82	AJ1	C	536	545	Right-handed alpha
Helix 83	AJ2	C	556	569	Right-handed alpha
Helix 84	AJ3	C	574	577	Right-handed 310
Helix 85	AJ4	C	578	587	Right-handed alpha
Helix 86	AJ5	C	636	649	Right-handed alpha
Helix 87	AJ6	C	650	659	Right-handed alpha
Helix 88	AJ7	C	663	685	Right-handed alpha
Helix 89	AJ8	C	689	717	Right-handed alpha
Helix 90	AJ9	C	718	724	Right-handed alpha
Helix 91	AK1	C	729	733	Right-handed 310
Helix 92	AK2	C	736	745	Right-handed alpha
Helix 93	AK3	C	746	751	Right-handed alpha
Helix 94	AK4	C	752	760	Right-handed alpha
Helix 95	AK5	C	995	1007	Right-handed alpha
Helix 96	AK6	C	1110	1116	Right-handed alpha
Helix 97	AK7	C	1118	1142	Right-handed alpha
Helix 98	AK8	C	1186	1215	Right-handed alpha
Helix 99	AK9	C	1215	1240	Right-handed alpha
Helix 100	AL1	D	165	176	Right-handed alpha
Helix 101	AL2	D	201	216	Right-handed alpha
Helix 102	AL3	D	227	242	Right-handed alpha
Helix 103	AL4	D	308	322	Right-handed alpha
Helix 104	AL5	D	342	355	Right-handed alpha
Helix 105	AL6	D	365	368	Right-handed 310
Helix 106	AL7	D	369	379	Right-handed alpha
Helix 107	AL8	D	413	423	Right-handed alpha
Helix 108	AL9	D	439	451	Right-handed alpha
Helix 109	AM1	D	455	467	Right-handed alpha
Helix 110	AM2	D	468	475	Right-handed alpha
Helix 111	AM3	D	486	499	Right-handed alpha
Helix 112	AM4	D	500	510	Right-handed alpha
Helix 113	AM5	D	513	518	Right-handed alpha
Helix 114	AM6	D	519	528	Right-handed alpha
Helix 115	AM7	D	536	545	Right-handed alpha
Helix 116	AM8	D	556	569	Right-handed alpha
Helix 117	AM9	D	578	588	Right-handed alpha
Helix 118	AN1	D	596	601	Right-handed alpha
Helix 119	AN2	D	636	648	Right-handed alpha
Helix 120	AN3	D	650	659	Right-handed alpha
Helix 121	AN4	D	663	685	Right-handed alpha
Helix 122	AN5	D	689	717	Right-handed alpha
Helix 123	AN6	D	718	725	Right-handed alpha
Helix 124	AN7	D	736	745	Right-handed alpha
Helix 125	AN8	D	746	752	Right-handed alpha
Helix 126	AN9	D	752	761	Right-handed alpha
Helix 127	AO1	D	995	1005	Right-handed alpha
Helix 128	AO2	D	1109	1117	Right-handed alpha
Helix 129	AO3	D	1118	1142	Right-handed alpha
Helix 130	AO4	D	1186	1214	Right-handed alpha
Helix 131	AO5	D	1215	1240	Right-handed alpha
Helix 132	AO6	I	5	26	Right-handed alpha
Helix 133	AO7	I	29	34	Right-handed alpha
Helix 134	AO8	J	9	24	Right-handed alpha
Helix 135	AO9	J	29	39	Right-handed alpha

There are 14 sheets in PDB entry 8DDW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	137	first strand
Strand 2	E	7	11	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	275	first strand
Strand 2	A	141	147	parallel
Strand 3	A	154	161	anti-parallel
Strand 4	A	293	298	parallel
Strand 5	A	249	255	parallel
Strand 6	A	219	222	parallel
Strand 7	A	185	189	parallel
Strand 8	A	334	338	parallel
Strand 9	A	361	364	parallel
Strand 10	A	427	430	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	275	first strand
Strand 2	B	141	147	parallel
Strand 3	B	154	161	anti-parallel
Strand 4	B	293	298	parallel
Strand 5	B	249	255	parallel
Strand 6	B	219	222	parallel
Strand 7	B	185	190	parallel
Strand 8	B	334	339	parallel
Strand 9	B	361	364	parallel
Strand 10	B	428	430	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	275	first strand
Strand 2	C	141	147	parallel
Strand 3	C	154	161	anti-parallel
Strand 4	C	293	302	parallel
Strand 5	C	250	257	parallel
Strand 6	C	218	222	parallel
Strand 7	C	184	189	parallel
Strand 8	C	334	338	parallel
Strand 9	C	361	364	parallel
Strand 10	C	427	430	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	137	first strand
Strand 2	H	7	11	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	275	first strand
Strand 2	D	141	147	parallel
Strand 3	D	154	161	anti-parallel
Strand 4	D	293	298	parallel
Strand 5	D	250	255	parallel
Strand 6	D	219	222	parallel
Strand 7	D	185	189	parallel
Strand 8	D	334	338	parallel
Strand 9	D	361	363	parallel
Strand 10	D	427	428	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	46	50	first strand
Strand 2	I	336	340	anti-parallel
Strand 3	I	327	331	anti-parallel
Strand 4	I	315	320	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	58	63	first strand
Strand 2	I	69	74	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	89	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	100	105	first strand
Strand 2	I	111	116	anti-parallel
Strand 3	I	121	125	anti-parallel
Strand 4	I	134	139	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	146	151	first strand
Strand 2	I	156	161	anti-parallel
Strand 3	I	165	170	anti-parallel
Strand 4	I	176	181	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	187	192	first strand
Strand 2	I	198	203	anti-parallel
Strand 3	I	207	212	anti-parallel
Strand 4	I	217	223	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	231	234	first strand
Strand 2	I	240	244	anti-parallel
Strand 3	I	253	254	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	273	277	first strand
Strand 2	I	284	289	anti-parallel
Strand 3	I	297	298	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	294	295	first strand
Strand 2	I	307	308	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DDW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DDW