Analysis of interatomic Contacts of Structural Units in PDB entry:
8DDX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DDX entry

There are 10 chains in PDB entry 8DDX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 129	SER 1243
E	UNK 1	UNK 17
B	ILE 129	SER 1243
F	UNK 1	UNK 17
C	ILE 129	SER 1243
G	UNK 1	UNK 17
D	ILE 129	SER 1243
H	UNK 1	UNK 17
I	LEU 4	ASN 340
J	ALA 7	SER 68

There are189 helices in PDB entry 8DDX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	165	175	Right-handed alpha
Helix 2	AA2	A	201	216	Right-handed alpha
Helix 3	AA3	A	228	242	Right-handed alpha
Helix 4	AA4	A	257	259	Right-handed 310
Helix 5	AA5	A	308	321	Right-handed alpha
Helix 6	AA6	A	344	353	Right-handed alpha
Helix 7	AA7	A	369	379	Right-handed alpha
Helix 8	AA8	A	398	402	Right-handed 310
Helix 9	AA9	A	413	423	Right-handed alpha
Helix 10	AB1	A	439	450	Right-handed alpha
Helix 11	AB2	A	455	467	Right-handed alpha
Helix 12	AB3	A	468	475	Right-handed alpha
Helix 13	AB4	A	486	499	Right-handed alpha
Helix 14	AB5	A	500	510	Right-handed alpha
Helix 15	AB6	A	513	518	Right-handed alpha
Helix 16	AB7	A	519	527	Right-handed alpha
Helix 17	AB8	A	536	544	Right-handed alpha
Helix 18	AB9	A	556	569	Right-handed alpha
Helix 19	AC1	A	574	577	Right-handed 310
Helix 20	AC2	A	578	587	Right-handed alpha
Helix 21	AC3	A	636	648	Right-handed alpha
Helix 22	AC4	A	650	659	Right-handed alpha
Helix 23	AC5	A	663	685	Right-handed alpha
Helix 24	AC6	A	690	717	Right-handed alpha
Helix 25	AC7	A	717	725	Right-handed alpha
Helix 26	AC8	A	729	733	Right-handed 310
Helix 27	AC9	A	736	744	Right-handed alpha
Helix 28	AD1	A	746	751	Right-handed alpha
Helix 29	AD2	A	752	765	Right-handed alpha
Helix 30	AD3	A	774	783	Right-handed alpha
Helix 31	AD4	A	784	788	Right-handed 310
Helix 32	AD5	A	862	869	Right-handed alpha
Helix 33	AD6	A	870	895	Right-handed alpha
Helix 34	AD7	A	902	925	Right-handed alpha
Helix 35	AD8	A	930	940	Right-handed alpha
Helix 36	AD9	A	941	962	Right-handed alpha
Helix 37	AE1	A	966	985	Right-handed alpha
Helix 38	AE2	A	985	991	Right-handed alpha
Helix 39	AE3	A	996	1033	Right-handed alpha
Helix 40	AE4	A	1041	1046	Right-handed alpha
Helix 41	AE5	A	1047	1054	Right-handed alpha
Helix 42	AE6	A	1089	1105	Right-handed alpha
Helix 43	AE7	A	1105	1117	Right-handed alpha
Helix 44	AE8	A	1118	1143	Right-handed alpha
Helix 45	AE9	A	1150	1164	Right-handed alpha
Helix 46	AF1	A	1186	1214	Right-handed alpha
Helix 47	AF2	A	1215	1240	Right-handed alpha
Helix 48	AF3	B	165	175	Right-handed alpha
Helix 49	AF4	B	200	216	Right-handed alpha
Helix 50	AF5	B	228	241	Right-handed alpha
Helix 51	AF6	B	257	259	Right-handed 310
Helix 52	AF7	B	308	321	Right-handed alpha
Helix 53	AF8	B	343	354	Right-handed alpha
Helix 54	AF9	B	369	379	Right-handed alpha
Helix 55	AG1	B	413	423	Right-handed alpha
Helix 56	AG2	B	439	452	Right-handed alpha
Helix 57	AG3	B	455	467	Right-handed alpha
Helix 58	AG4	B	468	475	Right-handed alpha
Helix 59	AG5	B	486	498	Right-handed alpha
Helix 60	AG6	B	500	509	Right-handed alpha
Helix 61	AG7	B	513	518	Right-handed alpha
Helix 62	AG8	B	519	527	Right-handed alpha
Helix 63	AG9	B	536	546	Right-handed alpha
Helix 64	AH1	B	556	569	Right-handed alpha
Helix 65	AH2	B	574	577	Right-handed 310
Helix 66	AH3	B	578	586	Right-handed alpha
Helix 67	AH4	B	636	648	Right-handed alpha
Helix 68	AH5	B	650	659	Right-handed alpha
Helix 69	AH6	B	663	685	Right-handed alpha
Helix 70	AH7	B	690	717	Right-handed alpha
Helix 71	AH8	B	717	725	Right-handed alpha
Helix 72	AH9	B	736	744	Right-handed alpha
Helix 73	AI1	B	746	751	Right-handed alpha
Helix 74	AI2	B	752	765	Right-handed alpha
Helix 75	AI3	B	774	783	Right-handed alpha
Helix 76	AI4	B	784	788	Right-handed 310
Helix 77	AI5	B	862	869	Right-handed alpha
Helix 78	AI6	B	870	895	Right-handed alpha
Helix 79	AI7	B	902	925	Right-handed alpha
Helix 80	AI8	B	930	939	Right-handed alpha
Helix 81	AI9	B	942	962	Right-handed alpha
Helix 82	AJ1	B	964	985	Right-handed alpha
Helix 83	AJ2	B	985	991	Right-handed alpha
Helix 84	AJ3	B	996	1033	Right-handed alpha
Helix 85	AJ4	B	1041	1046	Right-handed alpha
Helix 86	AJ5	B	1047	1054	Right-handed alpha
Helix 87	AJ6	B	1087	1089	Right-handed 310
Helix 88	AJ7	B	1090	1105	Right-handed alpha
Helix 89	AJ8	B	1105	1117	Right-handed alpha
Helix 90	AJ9	B	1118	1142	Right-handed alpha
Helix 91	AK1	B	1147	1149	Right-handed 310
Helix 92	AK2	B	1150	1164	Right-handed alpha
Helix 93	AK3	B	1186	1214	Right-handed alpha
Helix 94	AK4	B	1215	1240	Right-handed alpha
Helix 95	AK5	C	165	176	Right-handed alpha
Helix 96	AK6	C	201	216	Right-handed alpha
Helix 97	AK7	C	228	242	Right-handed alpha
Helix 98	AK8	C	257	259	Right-handed 310
Helix 99	AK9	C	279	283	Right-handed 310
Helix 100	AL1	C	308	322	Right-handed alpha
Helix 101	AL2	C	342	353	Right-handed alpha
Helix 102	AL3	C	369	379	Right-handed alpha
Helix 103	AL4	C	413	423	Right-handed alpha
Helix 104	AL5	C	439	453	Right-handed alpha
Helix 105	AL6	C	455	466	Right-handed alpha
Helix 106	AL7	C	468	475	Right-handed alpha
Helix 107	AL8	C	486	499	Right-handed alpha
Helix 108	AL9	C	500	510	Right-handed alpha
Helix 109	AM1	C	513	518	Right-handed alpha
Helix 110	AM2	C	519	527	Right-handed alpha
Helix 111	AM3	C	536	546	Right-handed alpha
Helix 112	AM4	C	556	569	Right-handed alpha
Helix 113	AM5	C	578	586	Right-handed alpha
Helix 114	AM6	C	636	648	Right-handed alpha
Helix 115	AM7	C	650	659	Right-handed alpha
Helix 116	AM8	C	663	685	Right-handed alpha
Helix 117	AM9	C	690	717	Right-handed alpha
Helix 118	AN1	C	718	725	Right-handed alpha
Helix 119	AN2	C	736	744	Right-handed alpha
Helix 120	AN3	C	746	751	Right-handed alpha
Helix 121	AN4	C	752	764	Right-handed alpha
Helix 122	AN5	C	772	783	Right-handed alpha
Helix 123	AN6	C	784	789	Right-handed alpha
Helix 124	AN7	C	862	869	Right-handed alpha
Helix 125	AN8	C	870	895	Right-handed alpha
Helix 126	AN9	C	902	925	Right-handed alpha
Helix 127	AO1	C	930	939	Right-handed alpha
Helix 128	AO2	C	941	962	Right-handed alpha
Helix 129	AO3	C	964	991	Right-handed alpha
Helix 130	AO4	C	997	1033	Right-handed alpha
Helix 131	AO5	C	1041	1054	Right-handed alpha
Helix 132	AO6	C	1089	1105	Right-handed alpha
Helix 133	AO7	C	1105	1117	Right-handed alpha
Helix 134	AO8	C	1118	1143	Right-handed alpha
Helix 135	AO9	C	1147	1149	Right-handed 310
Helix 136	AP1	C	1150	1164	Right-handed alpha
Helix 137	AP2	C	1186	1213	Right-handed alpha
Helix 138	AP3	C	1215	1240	Right-handed alpha
Helix 139	AP4	D	165	175	Right-handed alpha
Helix 140	AP5	D	201	216	Right-handed alpha
Helix 141	AP6	D	228	242	Right-handed alpha
Helix 142	AP7	D	257	259	Right-handed 310
Helix 143	AP8	D	279	283	Right-handed 310
Helix 144	AP9	D	308	320	Right-handed alpha
Helix 145	AQ1	D	344	355	Right-handed alpha
Helix 146	AQ2	D	369	379	Right-handed alpha
Helix 147	AQ3	D	398	402	Right-handed 310
Helix 148	AQ4	D	413	423	Right-handed alpha
Helix 149	AQ5	D	439	450	Right-handed alpha
Helix 150	AQ6	D	451	453	Right-handed 310
Helix 151	AQ7	D	455	467	Right-handed alpha
Helix 152	AQ8	D	468	475	Right-handed alpha
Helix 153	AQ9	D	486	498	Right-handed alpha
Helix 154	AR1	D	500	509	Right-handed alpha
Helix 155	AR2	D	513	518	Right-handed alpha
Helix 156	AR3	D	519	527	Right-handed alpha
Helix 157	AR4	D	536	544	Right-handed alpha
Helix 158	AR5	D	556	569	Right-handed alpha
Helix 159	AR6	D	578	587	Right-handed alpha
Helix 160	AR7	D	595	601	Right-handed alpha
Helix 161	AR8	D	636	648	Right-handed alpha
Helix 162	AR9	D	650	659	Right-handed alpha
Helix 163	AS1	D	663	685	Right-handed alpha
Helix 164	AS2	D	690	717	Right-handed alpha
Helix 165	AS3	D	717	727	Right-handed alpha
Helix 166	AS4	D	736	744	Right-handed alpha
Helix 167	AS5	D	746	751	Right-handed alpha
Helix 168	AS6	D	752	765	Right-handed alpha
Helix 169	AS7	D	774	783	Right-handed alpha
Helix 170	AS8	D	784	789	Right-handed 310
Helix 171	AS9	D	862	868	Right-handed alpha
Helix 172	AT1	D	870	895	Right-handed alpha
Helix 173	AT2	D	902	926	Right-handed alpha
Helix 174	AT3	D	930	939	Right-handed alpha
Helix 175	AT4	D	941	962	Right-handed alpha
Helix 176	AT5	D	964	985	Right-handed alpha
Helix 177	AT6	D	985	991	Right-handed alpha
Helix 178	AT7	D	996	1033	Right-handed alpha
Helix 179	AT8	D	1041	1054	Right-handed alpha
Helix 180	AT9	D	1090	1116	Right-handed alpha
Helix 181	AU1	D	1117	1143	Right-handed alpha
Helix 182	AU2	D	1151	1164	Right-handed alpha
Helix 183	AU3	D	1186	1214	Right-handed alpha
Helix 184	AU4	D	1215	1240	Right-handed alpha
Helix 185	AU5	I	10	24	Right-handed alpha
Helix 186	AU6	I	33	37	Right-handed 310
Helix 187	AU7	J	9	23	Right-handed alpha
Helix 188	AU8	J	29	34	Right-handed alpha
Helix 189	AU9	J	36	46	Right-handed alpha

There are 17 sheets in PDB entry 8DDX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	134	first strand
Strand 2	E	10	11	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	275	first strand
Strand 2	A	142	147	parallel
Strand 3	A	154	161	anti-parallel
Strand 4	A	293	298	parallel
Strand 5	A	249	255	parallel
Strand 6	A	218	222	parallel
Strand 7	A	184	187	parallel
Strand 8	A	334	338	parallel
Strand 9	A	361	364	parallel
Strand 10	A	428	430	parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	273	first strand
Strand 2	B	141	145	parallel
Strand 3	B	154	161	anti-parallel
Strand 4	B	293	298	parallel
Strand 5	B	250	255	parallel
Strand 6	B	219	222	parallel
Strand 7	B	185	187	parallel
Strand 8	B	334	338	parallel
Strand 9	B	361	364	parallel
Strand 10	B	427	430	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	134	first strand
Strand 2	G	10	11	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	275	first strand
Strand 2	C	141	147	parallel
Strand 3	C	154	161	anti-parallel
Strand 4	C	293	298	parallel
Strand 5	C	249	255	parallel
Strand 6	C	218	222	parallel
Strand 7	C	184	187	parallel
Strand 8	C	334	338	parallel
Strand 9	C	361	364	parallel
Strand 10	C	427	430	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	134	first strand
Strand 2	H	10	11	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	255	first strand
Strand 2	D	293	298	parallel
Strand 3	D	154	161	parallel
Strand 4	D	142	147	anti-parallel
Strand 5	D	271	275	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	221	first strand
Strand 2	D	185	190	parallel
Strand 3	D	335	339	parallel
Strand 4	D	361	364	parallel
Strand 5	D	427	430	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	46	51	first strand
Strand 2	I	336	340	anti-parallel
Strand 3	I	327	331	anti-parallel
Strand 4	I	315	320	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	58	62	first strand
Strand 2	I	71	74	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	78	82	first strand
Strand 2	I	89	94	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	100	103	first strand
Strand 2	I	111	116	anti-parallel
Strand 3	I	120	125	anti-parallel
Strand 4	I	134	140	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	146	151	first strand
Strand 2	I	156	161	anti-parallel
Strand 3	I	165	170	anti-parallel
Strand 4	I	176	181	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	198	199	first strand
Strand 2	I	211	212	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	207	209	first strand
Strand 2	I	221	223	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	229	234	first strand
Strand 2	I	240	245	anti-parallel
Strand 3	I	250	254	anti-parallel
Strand 4	I	260	263	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	273	277	first strand
Strand 2	I	284	289	anti-parallel
Strand 3	I	295	298	anti-parallel
Strand 4	I	304	307	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DDX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DDX