Analysis of interatomic Contacts of Structural Units in PDB entry:
8DE3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DE3 entry

There are 3 chains in PDB entry 8DE3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 116PRO 654
B
 GLN 20THR 137
C
 ASP 21ILE 130
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 8DE3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
121 134Right-handed alpha
Helix 2
AA2
A
135 139Right-handed 310
Helix 3
AA3
A
140 149Right-handed alpha
Helix 4
AA4
A
150 153Right-handed 310
Helix 5
AA5
A
154 166Right-handed alpha
Helix 6
AA6
A
166 181Right-handed alpha
Helix 7
AA7
A
185 192Right-handed alpha
Helix 8
AA8
A
193 196Right-handed 310
Helix 9
AA9
A
197 227Right-handed alpha
Helix 10
AB1
A
263 272Right-handed alpha
Helix 11
AB2
A
275 279Right-handed 310
Helix 12
AB3
A
289 307Right-handed alpha
Helix 13
AB4
A
310 322Right-handed alpha
Helix 14
AB5
A
323 338Right-handed alpha
Helix 15
AB6
A
341 350Right-handed alpha
Helix 16
AB7
A
353 358Right-handed 310
Helix 17
AB8
A
359 375Right-handed alpha
Helix 18
AB9
A
380 387Right-handed alpha
Helix 19
AC1
A
393 427Right-handed alpha
Helix 20
AC2
A
439 454Right-handed alpha
Helix 21
AC3
A
457 490Right-handed alpha
Helix 22
AC4
A
497 518Right-handed alpha
Helix 23
AC5
A
521 531Right-handed alpha
Helix 24
AC6
A
535 552Right-handed alpha
Helix 25
AC7
A
554 567Right-handed alpha
Helix 26
AC8
A
571 581Right-handed alpha
Helix 27
AC9
A
581 595Right-handed alpha
Helix 28
AD1
A
608 624Right-handed alpha
Helix 29
AD2
A
624 637Right-handed alpha
Helix 30
AD3
A
640 650Right-handed alpha
Helix 31
AD4
B
47 51Right-handed 310
Helix 32
AD5
B
106 110Right-handed 310
Helix 33
AD6
B
120 124Right-handed 310
Helix 34
AD7
C
103 107Right-handed 310
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There are 7 sheets in PDB entry 8DE3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
601 602first strand
Strand 2
A
605 606anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 25first strand
Strand 2
B
35 44anti-parallel
Strand 3
B
97 105anti-parallel
Strand 4
B
87 92anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 78first strand
Strand 2
B
64 70anti-parallel
Strand 3
B
53 58anti-parallel
Strand 4
B
112 117anti-parallel
Strand 5
B
129 130anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 78first strand
Strand 2
B
64 70anti-parallel
Strand 3
B
53 58anti-parallel
Strand 4
B
112 117anti-parallel
Strand 5
B
134 135anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
25 27first strand
Strand 2
C
39 44anti-parallel
Strand 3
C
94 99anti-parallel
Strand 4
C
86 91anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 32first strand
Strand 2
C
127 129parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 78first strand
Strand 2
C
69 73anti-parallel
Strand 3
C
57 62anti-parallel
Strand 4
C
109 114anti-parallel
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