Analysis of interatomic Contacts of Structural Units in PDB entry:
8DE4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DE4 entry

There are 3 chains in PDB entry 8DE4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 116PRO 654
B
 GLN 20THR 137
C
 ASP 21ILE 130
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8DE4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
121 134Right-handed alpha
Helix 2
AA2
A
137 149Right-handed alpha
Helix 3
AA3
A
154 181Right-handed alpha
Helix 4
AA4
A
186 192Right-handed alpha
Helix 5
AA5
A
193 195Right-handed 310
Helix 6
AA6
A
196 227Right-handed alpha
Helix 7
AA7
A
263 272Right-handed alpha
Helix 8
AA8
A
275 279Right-handed 310
Helix 9
AA9
A
289 307Right-handed alpha
Helix 10
AB1
A
310 322Right-handed alpha
Helix 11
AB2
A
323 337Right-handed alpha
Helix 12
AB3
A
341 350Right-handed alpha
Helix 13
AB4
A
355 358Right-handed 310
Helix 14
AB5
A
359 375Right-handed alpha
Helix 15
AB6
A
379 387Right-handed alpha
Helix 16
AB7
A
393 428Right-handed alpha
Helix 17
AB8
A
440 454Right-handed alpha
Helix 18
AB9
A
457 491Right-handed alpha
Helix 19
AC1
A
492 495Right-handed 310
Helix 20
AC2
A
497 518Right-handed alpha
Helix 21
AC3
A
521 532Right-handed alpha
Helix 22
AC4
A
537 552Right-handed alpha
Helix 23
AC5
A
554 567Right-handed alpha
Helix 24
AC6
A
571 595Right-handed alpha
Helix 25
AC7
A
608 624Right-handed alpha
Helix 26
AC8
A
624 637Right-handed alpha
Helix 27
AC9
A
640 650Right-handed alpha
Helix 28
AD1
B
47 51Right-handed 310
Helix 29
AD2
B
81 85Right-handed 310
Helix 30
AD3
B
106 110Right-handed 310
Helix 31
AD4
C
103 107Right-handed 310
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There are 7 sheets in PDB entry 8DE4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
601 602first strand
Strand 2
A
605 606anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 25first strand
Strand 2
B
41 44anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 39first strand
Strand 2
B
97 102anti-parallel
Strand 3
B
87 92anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
64 70anti-parallel
Strand 3
B
53 58anti-parallel
Strand 4
B
112 117anti-parallel
Strand 5
B
129 130anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 79first strand
Strand 2
B
64 70anti-parallel
Strand 3
B
53 58anti-parallel
Strand 4
B
112 117anti-parallel
Strand 5
B
134 135anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
24 27first strand
Strand 2
C
39 45anti-parallel
Strand 3
C
94 99anti-parallel
Strand 4
C
86 89anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
30 32first strand
Strand 2
C
126 129parallel
Strand 3
C
109 114anti-parallel
Strand 4
C
57 62anti-parallel
Strand 5
C
69 73anti-parallel
Strand 6
C
77 78anti-parallel
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