Analysis of interatomic Contacts of Structural Units in PDB entry:
8DE5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DE5 entry

There are 2 chains in PDB entry 8DE5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 151
A
 THR 153LYS 338
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8DE5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 23Right-handed alpha
Helix 2
AA2
A
38 48Right-handed alpha
Helix 3
AA3
A
81 85Right-handed 310
Helix 4
AA4
A
86 91Right-handed 310
Helix 5
AA5
A
104 109Right-handed alpha
Helix 6
AA6
A
109 114Right-handed alpha
Helix 7
AA7
A
136 140Right-handed 310
Helix 8
AA8
A
151 169Right-handed alpha
Helix 9
AA9
A
196 200Right-handed 310
Helix 10
AB1
A
201 205Right-handed 310
Helix 11
AB2
A
212 221Right-handed alpha
Helix 12
AB3
A
222 225Right-handed 310
Helix 13
AB4
A
254 268Right-handed alpha
Helix 14
AB5
A
282 287Right-handed 310
Helix 15
AB6
A
317 336Right-handed alpha
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There are 3 sheets in PDB entry 8DE5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
66 69anti-parallel
Strand 3
A
73 77anti-parallel
Strand 4
A
28 33parallel
Strand 5
A
4 8parallel
Strand 6
A
94 97parallel
Strand 7
A
118 121parallel
Strand 8
A
146 148parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 210first strand
Strand 2
A
228 235anti-parallel
Strand 3
A
170 180parallel
Strand 4
A
241 249anti-parallel
Strand 5
A
307 314anti-parallel
Strand 6
A
293 296anti-parallel
Strand 7
A
274 277parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 210first strand
Strand 2
A
228 235anti-parallel
Strand 3
A
170 180parallel
Strand 4
A
241 249anti-parallel
Strand 5
A
307 314anti-parallel
Strand 6
A
301 304anti-parallel
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