Analysis of interatomic Contacts of Structural Units in PDB entry:
8DE7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DE7 entry

There are 2 chains in PDB entry 8DE7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 VAL 41THR 303
A
 THR 39LYS 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8DE7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
43 91Right-handed alpha
Helix 2
AA2
B
95 113Right-handed alpha
Helix 3
AA3
B
128 142Right-handed alpha
Helix 4
AA4
B
152 194Right-handed alpha
Helix 5
AA5
B
202 223Right-handed alpha
Helix 6
AA6
B
224 235Right-handed alpha
Helix 7
AA7
B
237 251Right-handed alpha
Helix 8
AA8
B
269 302Right-handed alpha
Helix 9
AA9
A
43 91Right-handed alpha
Helix 10
AB1
A
95 113Right-handed alpha
Helix 11
AB2
A
128 142Right-handed alpha
Helix 12
AB3
A
152 197Right-handed alpha
Helix 13
AB4
A
202 223Right-handed alpha
Helix 14
AB5
A
223 234Right-handed alpha
Helix 15
AB6
A
237 250Right-handed alpha
Helix 16
AB7
A
270 301Right-handed alpha
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There are no sheets in PDB entry 8DE7
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il