Analysis of interatomic Contacts of Structural Units in PDB entry:
8DEB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DEB entry

There are 2 chains in PDB entry 8DEB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 397
B
 GLY 2GLN 252
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 8DEB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 22Right-handed alpha
Helix 2
AA2
A
36 48Right-handed alpha
Helix 3
AA3
A
61 73Right-handed alpha
Helix 4
AA4
A
82 84Right-handed 310
Helix 5
AA5
A
85 97Right-handed alpha
Helix 6
AA6
A
116 121Right-handed alpha
Helix 7
AA7
A
122 129Right-handed alpha
Helix 8
AA8
A
142 155Right-handed alpha
Helix 9
AA9
A
181 190Right-handed alpha
Helix 10
AB1
A
229 238Right-handed alpha
Helix 11
AB2
A
251 264Right-handed alpha
Helix 12
AB3
A
280 289Right-handed alpha
Helix 13
AB4
A
291 299Right-handed 310
Helix 14
AB5
A
328 336Right-handed alpha
Helix 15
AB6
A
338 357Right-handed alpha
Helix 16
AB7
A
369 371Right-handed 310
Helix 17
AB8
A
372 383Right-handed alpha
Helix 18
AB9
B
10 22Right-handed alpha
Helix 19
AC1
B
36 48Right-handed alpha
Helix 20
AC2
B
61 73Right-handed alpha
Helix 21
AC3
B
82 84Right-handed 310
Helix 22
AC4
B
85 97Right-handed alpha
Helix 23
AC5
B
116 121Right-handed alpha
Helix 24
AC6
B
122 129Right-handed alpha
Helix 25
AC7
B
142 155Right-handed alpha
Helix 26
AC8
B
182 190Right-handed alpha
Helix 27
AC9
B
228 238Right-handed alpha
Helix 28
AD1
B
251 264Right-handed alpha
Helix 29
AD2
B
280 289Right-handed alpha
Helix 30
AD3
B
328 336Right-handed alpha
Helix 31
AD4
B
338 357Right-handed alpha
Helix 32
AD5
B
369 371Right-handed 310
Helix 33
AD6
B
372 383Right-handed alpha
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There are 8 sheets in PDB entry 8DEB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 56first strand
Strand 2
A
29 34parallel
Strand 3
A
3 7parallel
Strand 4
A
76 79parallel
Strand 5
A
99 102parallel
Strand 6
A
132 135parallel
Strand 7
A
364 367parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 203first strand
Strand 2
A
194 197anti-parallel
Strand 3
A
243 249anti-parallel
Strand 4
A
219 225anti-parallel
Strand 5
A
210 215anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 203first strand
Strand 2
A
194 197anti-parallel
Strand 3
A
243 249anti-parallel
Strand 4
A
158 168parallel
Strand 5
A
302 313anti-parallel
Strand 6
A
316 327anti-parallel
Strand 7
A
388 391anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 274first strand
Strand 2
A
277 279anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 56first strand
Strand 2
B
29 34parallel
Strand 3
B
3 7parallel
Strand 4
B
76 79parallel
Strand 5
B
99 102parallel
Strand 6
B
132 135parallel
Strand 7
B
364 367parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 203first strand
Strand 2
B
194 197anti-parallel
Strand 3
B
243 249anti-parallel
Strand 4
B
219 225anti-parallel
Strand 5
B
210 215anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
200 203first strand
Strand 2
B
194 197anti-parallel
Strand 3
B
243 249anti-parallel
Strand 4
B
158 168parallel
Strand 5
B
302 313anti-parallel
Strand 6
B
316 327anti-parallel
Strand 7
B
387 391anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
272 273first strand
Strand 2
B
278 279anti-parallel
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