Analysis of interatomic Contacts of Structural Units in PDB entry:
8DEI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DEI entry

There are 4 chains in PDB entry 8DEI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3	ALA 477
B	LYS 1	GLU 476
C	GLU 3	GLU 461
D	LEU 7	GLU 476

There are 80 helices in PDB entry 8DEI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	32	Right-handed alpha
Helix 2	AA2	A	42	51	Right-handed alpha
Helix 3	AA3	A	52	54	Right-handed 310
Helix 4	AA4	A	64	74	Right-handed alpha
Helix 5	AA5	A	82	89	Right-handed alpha
Helix 6	AA6	A	90	96	Right-handed alpha
Helix 7	AA7	A	128	130	Right-handed 310
Helix 8	AA8	A	131	142	Right-handed alpha
Helix 9	AA9	A	153	162	Right-handed alpha
Helix 10	AB1	A	185	201	Right-handed alpha
Helix 11	AB2	A	209	219	Right-handed alpha
Helix 12	AB3	A	228	230	Right-handed 310
Helix 13	AB4	A	231	238	Right-handed alpha
Helix 14	AB5	A	272	283	Right-handed alpha
Helix 15	AB6	A	286	297	Right-handed alpha
Helix 16	AB7	A	304	312	Right-handed alpha
Helix 17	AB8	A	314	327	Right-handed alpha
Helix 18	AB9	A	335	352	Right-handed alpha
Helix 19	AC1	A	356	368	Right-handed alpha
Helix 20	AC2	A	371	386	Right-handed alpha
Helix 21	AC3	A	386	475	Right-handed alpha
Helix 22	AC4	B	16	32	Right-handed alpha
Helix 23	AC5	B	42	51	Right-handed alpha
Helix 24	AC6	B	52	54	Right-handed 310
Helix 25	AC7	B	64	74	Right-handed alpha
Helix 26	AC8	B	82	87	Right-handed alpha
Helix 27	AC9	B	90	96	Right-handed alpha
Helix 28	AD1	B	131	142	Right-handed alpha
Helix 29	AD2	B	153	162	Right-handed alpha
Helix 30	AD3	B	185	201	Right-handed alpha
Helix 31	AD4	B	209	219	Right-handed alpha
Helix 32	AD5	B	228	230	Right-handed 310
Helix 33	AD6	B	231	238	Right-handed alpha
Helix 34	AD7	B	272	283	Right-handed alpha
Helix 35	AD8	B	286	297	Right-handed alpha
Helix 36	AD9	B	304	312	Right-handed alpha
Helix 37	AE1	B	314	327	Right-handed alpha
Helix 38	AE2	B	335	352	Right-handed alpha
Helix 39	AE3	B	356	368	Right-handed alpha
Helix 40	AE4	B	371	386	Right-handed alpha
Helix 41	AE5	B	386	476	Right-handed alpha
Helix 42	AE6	C	16	32	Right-handed alpha
Helix 43	AE7	C	42	51	Right-handed alpha
Helix 44	AE8	C	70	74	Right-handed 310
Helix 45	AE9	C	82	87	Right-handed alpha
Helix 46	AF1	C	90	96	Right-handed alpha
Helix 47	AF2	C	131	143	Right-handed alpha
Helix 48	AF3	C	153	162	Right-handed alpha
Helix 49	AF4	C	185	201	Right-handed alpha
Helix 50	AF5	C	209	219	Right-handed alpha
Helix 51	AF6	C	228	230	Right-handed 310
Helix 52	AF7	C	231	238	Right-handed alpha
Helix 53	AF8	C	272	282	Right-handed alpha
Helix 54	AF9	C	286	297	Right-handed alpha
Helix 55	AG1	C	304	312	Right-handed alpha
Helix 56	AG2	C	314	326	Right-handed alpha
Helix 57	AG3	C	335	352	Right-handed alpha
Helix 58	AG4	C	356	368	Right-handed alpha
Helix 59	AG5	C	371	386	Right-handed alpha
Helix 60	AG6	C	388	461	Right-handed alpha
Helix 61	AG7	D	16	32	Right-handed alpha
Helix 62	AG8	D	42	51	Right-handed alpha
Helix 63	AG9	D	82	87	Right-handed alpha
Helix 64	AH1	D	90	96	Right-handed alpha
Helix 65	AH2	D	128	130	Right-handed 310
Helix 66	AH3	D	131	141	Right-handed alpha
Helix 67	AH4	D	153	162	Right-handed alpha
Helix 68	AH5	D	185	201	Right-handed alpha
Helix 69	AH6	D	209	219	Right-handed alpha
Helix 70	AH7	D	228	230	Right-handed 310
Helix 71	AH8	D	231	239	Right-handed alpha
Helix 72	AH9	D	272	283	Right-handed alpha
Helix 73	AI1	D	286	297	Right-handed alpha
Helix 74	AI2	D	304	312	Right-handed alpha
Helix 75	AI3	D	314	326	Right-handed alpha
Helix 76	AI4	D	335	352	Right-handed alpha
Helix 77	AI5	D	356	369	Right-handed alpha
Helix 78	AI6	D	371	386	Right-handed alpha
Helix 79	AI7	D	386	447	Right-handed alpha
Helix 80	AI8	D	454	476	Right-handed alpha

There are 21 sheets in PDB entry 8DEI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	38	first strand
Strand 2	A	6	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	258	266	anti-parallel
Strand 5	A	106	111	anti-parallel
Strand 6	A	301	302	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	38	first strand
Strand 2	A	6	10	parallel
Strand 3	A	59	63	parallel
Strand 4	A	258	266	anti-parallel
Strand 5	A	328	329	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	102	103	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	222	227	parallel
Strand 3	A	114	118	anti-parallel
Strand 4	A	242	245	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	172	first strand
Strand 2	A	175	182	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	249	250	first strand
Strand 2	A	253	254	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	38	first strand
Strand 2	B	6	10	parallel
Strand 3	B	59	63	parallel
Strand 4	B	258	266	anti-parallel
Strand 5	B	106	111	anti-parallel
Strand 6	B	301	302	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	34	38	first strand
Strand 2	B	6	10	parallel
Strand 3	B	59	63	parallel
Strand 4	B	258	266	anti-parallel
Strand 5	B	328	329	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	99	first strand
Strand 2	B	102	103	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	145	147	first strand
Strand 2	B	222	227	parallel
Strand 3	B	114	118	anti-parallel
Strand 4	B	242	245	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	171	first strand
Strand 2	B	176	182	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	249	250	first strand
Strand 2	B	253	254	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	7	10	parallel
Strand 3	C	59	62	parallel
Strand 4	C	258	267	anti-parallel
Strand 5	C	106	111	anti-parallel
Strand 6	C	301	302	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	77	first strand
Strand 2	C	258	267	anti-parallel
Strand 3	C	328	329	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	C	222	227	parallel
Strand 3	C	114	118	anti-parallel
Strand 4	C	242	245	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	172	first strand
Strand 2	C	175	182	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	38	first strand
Strand 2	D	8	10	parallel
Strand 3	D	59	62	parallel
Strand 4	D	258	266	anti-parallel
Strand 5	D	106	111	anti-parallel
Strand 6	D	301	302	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	38	first strand
Strand 2	D	8	10	parallel
Strand 3	D	59	62	parallel
Strand 4	D	258	266	anti-parallel
Strand 5	D	328	329	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	99	first strand
Strand 2	D	102	103	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	145	147	first strand
Strand 2	D	222	227	parallel
Strand 3	D	114	118	anti-parallel
Strand 4	D	242	245	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	167	172	first strand
Strand 2	D	175	182	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DEI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DEI