Analysis of interatomic Contacts of Structural Units in PDB entry:
8DEJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DEJ entry

There are 14 chains in PDB entry 8DEJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 8	ALA 227
B	MET 1	LEU 290
C	MET 1	LEU 290
D	MET 1	LEU 290
E	MET 1	LEU 290
F	MET 1	LEU 290
G	MET 1	LEU 290
H	MET 1	LEU 290
I	LEU 3	LYS 608
J	VAL 1	LYS 119
K	VAL 1	LYS 119
L	G 2	A 48
M	C 2	G 41
N	A 1	G 48

There are105 helices in PDB entry 8DEJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	28	Right-handed 310
Helix 2	AA2	A	38	48	Right-handed alpha
Helix 3	AA3	A	86	93	Right-handed alpha
Helix 4	AA4	A	103	105	Right-handed 310
Helix 5	AA5	A	137	152	Right-handed alpha
Helix 6	AA6	A	222	227	Right-handed alpha
Helix 7	AA7	B	43	60	Right-handed alpha
Helix 8	AA8	B	102	111	Right-handed alpha
Helix 9	AA9	B	113	120	Right-handed alpha
Helix 10	AB1	B	193	198	Right-handed alpha
Helix 11	AB2	B	203	216	Right-handed alpha
Helix 12	AB3	B	217	221	Right-handed 310
Helix 13	AB4	B	247	255	Right-handed alpha
Helix 14	AB5	B	269	271	Right-handed 310
Helix 15	AB6	C	43	60	Right-handed alpha
Helix 16	AB7	C	74	87	Right-handed alpha
Helix 17	AB8	C	97	101	Right-handed 310
Helix 18	AB9	C	102	112	Right-handed alpha
Helix 19	AC1	C	113	120	Right-handed alpha
Helix 20	AC2	C	193	201	Right-handed alpha
Helix 21	AC3	C	203	217	Right-handed alpha
Helix 22	AC4	C	218	221	Right-handed 310
Helix 23	AC5	C	247	253	Right-handed alpha
Helix 24	AC6	C	269	271	Right-handed 310
Helix 25	AC7	D	43	60	Right-handed alpha
Helix 26	AC8	D	75	86	Right-handed alpha
Helix 27	AC9	D	98	113	Right-handed alpha
Helix 28	AD1	D	113	120	Right-handed alpha
Helix 29	AD2	D	193	201	Right-handed alpha
Helix 30	AD3	D	203	216	Right-handed alpha
Helix 31	AD4	D	217	221	Right-handed 310
Helix 32	AD5	D	247	253	Right-handed alpha
Helix 33	AD6	D	269	271	Right-handed 310
Helix 34	AD7	E	43	60	Right-handed alpha
Helix 35	AD8	E	74	87	Right-handed alpha
Helix 36	AD9	E	98	113	Right-handed alpha
Helix 37	AE1	E	113	120	Right-handed alpha
Helix 38	AE2	E	193	201	Right-handed alpha
Helix 39	AE3	E	203	216	Right-handed alpha
Helix 40	AE4	E	217	220	Right-handed 310
Helix 41	AE5	E	247	254	Right-handed alpha
Helix 42	AE6	E	269	271	Right-handed 310
Helix 43	AE7	F	43	60	Right-handed alpha
Helix 44	AE8	F	74	87	Right-handed alpha
Helix 45	AE9	F	98	113	Right-handed alpha
Helix 46	AF1	F	113	120	Right-handed alpha
Helix 47	AF2	F	193	201	Right-handed alpha
Helix 48	AF3	F	203	216	Right-handed alpha
Helix 49	AF4	F	217	221	Right-handed 310
Helix 50	AF5	F	247	253	Right-handed alpha
Helix 51	AF6	F	269	271	Right-handed 310
Helix 52	AF7	G	43	60	Right-handed alpha
Helix 53	AF8	G	74	87	Right-handed alpha
Helix 54	AF9	G	98	113	Right-handed alpha
Helix 55	AG1	G	113	120	Right-handed alpha
Helix 56	AG2	G	193	201	Right-handed alpha
Helix 57	AG3	G	203	216	Right-handed alpha
Helix 58	AG4	G	217	221	Right-handed 310
Helix 59	AG5	G	247	254	Right-handed alpha
Helix 60	AG6	G	269	271	Right-handed 310
Helix 61	AG7	H	43	60	Right-handed alpha
Helix 62	AG8	H	74	86	Right-handed alpha
Helix 63	AG9	H	98	113	Right-handed alpha
Helix 64	AH1	H	113	120	Right-handed alpha
Helix 65	AH2	H	193	201	Right-handed alpha
Helix 66	AH3	H	203	216	Right-handed alpha
Helix 67	AH4	H	217	220	Right-handed 310
Helix 68	AH5	H	247	254	Right-handed alpha
Helix 69	AH6	H	269	271	Right-handed 310
Helix 70	AH7	I	4	15	Right-handed alpha
Helix 71	AH8	I	83	88	Right-handed alpha
Helix 72	AH9	I	94	111	Right-handed alpha
Helix 73	AI1	I	117	127	Right-handed alpha
Helix 74	AI2	I	140	144	Right-handed 310
Helix 75	AI3	I	158	161	Right-handed 310
Helix 76	AI4	I	162	177	Right-handed alpha
Helix 77	AI5	I	222	226	Right-handed 310
Helix 78	AI6	I	231	236	Right-handed 310
Helix 79	AI7	I	239	255	Right-handed alpha
Helix 80	AI8	I	276	281	Right-handed alpha
Helix 81	AI9	I	281	288	Right-handed alpha
Helix 82	AJ1	I	377	388	Right-handed alpha
Helix 83	AJ2	I	402	410	Right-handed alpha
Helix 84	AJ3	I	415	419	Right-handed 310
Helix 85	AJ4	I	420	434	Right-handed alpha
Helix 86	AJ5	I	440	452	Right-handed alpha
Helix 87	AJ6	I	468	482	Right-handed alpha
Helix 88	AJ7	I	497	517	Right-handed alpha
Helix 89	AJ8	I	523	527	Right-handed 310
Helix 90	AJ9	I	528	535	Right-handed alpha
Helix 91	AK1	I	536	538	Right-handed 310
Helix 92	AK2	I	539	556	Right-handed alpha
Helix 93	AK3	I	564	576	Right-handed alpha
Helix 94	AK4	I	586	604	Right-handed alpha
Helix 95	AK5	J	9	29	Right-handed alpha
Helix 96	AK6	J	35	47	Right-handed alpha
Helix 97	AK7	J	48	50	Right-handed 310
Helix 98	AK8	J	51	68	Right-handed alpha
Helix 99	AK9	J	77	88	Right-handed alpha
Helix 100	AL1	J	98	117	Right-handed alpha
Helix 101	AL2	K	9	29	Right-handed alpha
Helix 102	AL3	K	35	47	Right-handed alpha
Helix 103	AL4	K	47	67	Right-handed alpha
Helix 104	AL5	K	77	90	Right-handed alpha
Helix 105	AL6	K	98	117	Right-handed alpha

There are 34 sheets in PDB entry 8DEJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	171	first strand
Strand 2	A	11	17	anti-parallel
Strand 3	A	118	128	anti-parallel
Strand 4	A	55	64	anti-parallel
Strand 5	A	214	215	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	107	114	parallel
Strand 3	A	71	78	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	B	69	70	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	196	first strand
Strand 2	A	202	211	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	42	first strand
Strand 2	B	141	143	anti-parallel
Strand 3	B	174	192	anti-parallel
Strand 4	B	150	156	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	138	first strand
Strand 2	B	174	192	anti-parallel
Strand 3	B	8	19	anti-parallel
Strand 4	B	228	239	anti-parallel
Strand 5	B	284	290	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	259	first strand
Strand 2	B	273	276	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	42	first strand
Strand 2	C	141	143	anti-parallel
Strand 3	C	174	192	anti-parallel
Strand 4	C	150	156	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	138	first strand
Strand 2	C	174	192	anti-parallel
Strand 3	C	8	19	anti-parallel
Strand 4	C	228	239	anti-parallel
Strand 5	C	284	287	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	124	first strand
Strand 2	C	128	131	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	259	first strand
Strand 2	C	273	277	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	41	42	first strand
Strand 2	D	141	143	anti-parallel
Strand 3	D	174	192	anti-parallel
Strand 4	D	150	156	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	138	first strand
Strand 2	D	174	192	anti-parallel
Strand 3	D	8	19	anti-parallel
Strand 4	D	228	239	anti-parallel
Strand 5	D	284	287	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	124	first strand
Strand 2	D	128	131	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	255	259	first strand
Strand 2	D	273	277	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	41	42	first strand
Strand 2	E	141	143	anti-parallel
Strand 3	E	174	192	anti-parallel
Strand 4	E	150	156	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	136	138	first strand
Strand 2	E	174	192	anti-parallel
Strand 3	E	8	19	anti-parallel
Strand 4	E	228	239	anti-parallel
Strand 5	E	284	290	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	255	259	first strand
Strand 2	E	273	277	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	41	42	first strand
Strand 2	F	141	143	anti-parallel
Strand 3	F	174	192	anti-parallel
Strand 4	F	150	156	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	136	138	first strand
Strand 2	F	174	192	anti-parallel
Strand 3	F	8	19	anti-parallel
Strand 4	F	228	239	anti-parallel
Strand 5	F	284	290	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	256	259	first strand
Strand 2	F	273	276	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	41	42	first strand
Strand 2	G	141	143	anti-parallel
Strand 3	G	174	192	anti-parallel
Strand 4	G	150	156	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	136	138	first strand
Strand 2	G	174	192	anti-parallel
Strand 3	G	8	19	anti-parallel
Strand 4	G	228	239	anti-parallel
Strand 5	G	284	287	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	122	124	first strand
Strand 2	G	128	131	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	255	259	first strand
Strand 2	G	273	277	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	41	42	first strand
Strand 2	H	141	143	anti-parallel
Strand 3	H	174	192	anti-parallel
Strand 4	H	150	156	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	136	138	first strand
Strand 2	H	174	192	anti-parallel
Strand 3	H	8	19	anti-parallel
Strand 4	H	228	239	anti-parallel
Strand 5	H	284	290	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	122	124	first strand
Strand 2	H	128	131	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	255	259	first strand
Strand 2	H	273	277	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	26	31	first strand
Strand 2	I	60	65	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	43	48	first strand
Strand 2	I	33	37	anti-parallel
Strand 3	I	147	152	parallel
Strand 4	I	81	82	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	51	52	first strand
Strand 2	I	57	58	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	201	202	first strand
Strand 2	I	214	215	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	261	264	first strand
Strand 2	I	267	272	anti-parallel
Strand 3	I	353	359	anti-parallel
Strand 4	I	364	370	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DEJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DEJ