Analysis of interatomic Contacts of Structural Units in PDB entry:
8DEK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DEK entry

There are 2 chains in PDB entry 8DEK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ARG 18	ARG 458
A	GLY 19	ARG 458

There are 37 helices in PDB entry 8DEK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	19	23	Right-handed 310
Helix 2	AA2	B	32	51	Right-handed alpha
Helix 3	AA3	B	75	98	Right-handed alpha
Helix 4	AA4	B	125	129	Right-handed 310
Helix 5	AA5	B	130	149	Right-handed alpha
Helix 6	AA6	B	152	155	Right-handed 310
Helix 7	AA7	B	191	197	Right-handed 310
Helix 8	AA8	B	209	229	Right-handed alpha
Helix 9	AA9	B	250	254	Right-handed 310
Helix 10	AB1	B	256	261	Right-handed 310
Helix 11	AB2	B	269	277	Right-handed alpha
Helix 12	AB3	B	279	284	Right-handed alpha
Helix 13	AB4	B	344	348	Right-handed 310
Helix 14	AB5	B	403	412	Right-handed alpha
Helix 15	AB6	B	413	421	Right-handed alpha
Helix 16	AB7	B	424	440	Right-handed alpha
Helix 17	AB8	B	442	447	Right-handed alpha
Helix 18	AB9	B	447	456	Right-handed alpha
Helix 19	AC1	B	457	458	Right-handed 310
Helix 20	AC2	A	19	23	Right-handed 310
Helix 21	AC3	A	32	51	Right-handed alpha
Helix 22	AC4	A	75	98	Right-handed alpha
Helix 23	AC5	A	125	129	Right-handed 310
Helix 24	AC6	A	130	149	Right-handed alpha
Helix 25	AC7	A	152	155	Right-handed 310
Helix 26	AC8	A	191	197	Right-handed 310
Helix 27	AC9	A	209	229	Right-handed alpha
Helix 28	AD1	A	250	254	Right-handed 310
Helix 29	AD2	A	256	261	Right-handed 310
Helix 30	AD3	A	269	277	Right-handed alpha
Helix 31	AD4	A	279	284	Right-handed alpha
Helix 32	AD5	A	344	348	Right-handed 310
Helix 33	AD6	A	403	412	Right-handed alpha
Helix 34	AD7	A	413	421	Right-handed alpha
Helix 35	AD8	A	424	440	Right-handed alpha
Helix 36	AD9	A	442	447	Right-handed alpha
Helix 37	AE1	A	447	456	Right-handed alpha

There are 10 sheets in PDB entry 8DEK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	122	first strand
Strand 2	B	60	67	parallel
Strand 3	B	157	162	parallel
Strand 4	B	180	185	parallel
Strand 5	B	172	175	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	246	first strand
Strand 2	B	266	267	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	295	first strand
Strand 2	B	301	302	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	315	first strand
Strand 2	B	318	325	anti-parallel
Strand 3	B	360	366	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	353	first strand
Strand 2	B	331	339	anti-parallel
Strand 3	B	374	383	anti-parallel
Strand 4	B	388	396	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	122	first strand
Strand 2	A	60	67	parallel
Strand 3	A	157	162	parallel
Strand 4	A	180	185	parallel
Strand 5	A	173	175	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	246	first strand
Strand 2	A	266	267	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	295	first strand
Strand 2	A	301	302	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	315	first strand
Strand 2	A	318	325	anti-parallel
Strand 3	A	360	366	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	354	first strand
Strand 2	A	331	339	anti-parallel
Strand 3	A	374	383	anti-parallel
Strand 4	A	388	396	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DEK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DEK