Analysis of interatomic Contacts of Structural Units in PDB entry:
8DEO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DEO entry

There are 2 chains in PDB entry 8DEO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 351	GLY 813
B	ASP 352	GLY 813

There are 10 helices in PDB entry 8DEO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	360	362	Right-handed 310
Helix 2	AA2	A	441	449	Right-handed alpha
Helix 3	AA3	A	473	479	Right-handed alpha
Helix 4	AA4	A	508	512	Right-handed alpha
Helix 5	AA5	A	560	564	Right-handed alpha
Helix 6	AA6	B	360	362	Right-handed 310
Helix 7	AA7	B	441	449	Right-handed alpha
Helix 8	AA8	B	473	479	Right-handed alpha
Helix 9	AA9	B	508	512	Right-handed alpha
Helix 10	AB1	B	560	564	Right-handed alpha

There are 26 sheets in PDB entry 8DEO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	358	first strand
Strand 2	A	601	604	anti-parallel
Strand 3	A	413	420	anti-parallel
Strand 4	A	593	595	anti-parallel
Strand 5	A	384	387	anti-parallel
Strand 6	A	370	373	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	358	first strand
Strand 2	A	601	604	anti-parallel
Strand 3	A	413	420	anti-parallel
Strand 4	A	534	541	anti-parallel
Strand 5	A	546	551	anti-parallel
Strand 6	A	554	559	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	368	first strand
Strand 2	A	398	403	anti-parallel
Strand 3	A	572	578	anti-parallel
Strand 4	A	432	438	anti-parallel
Strand 5	A	461	466	anti-parallel
Strand 6	A	487	495	anti-parallel
Strand 7	A	501	504	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	368	first strand
Strand 2	A	398	403	anti-parallel
Strand 3	A	572	578	anti-parallel
Strand 4	A	432	438	anti-parallel
Strand 5	A	461	466	anti-parallel
Strand 6	A	487	495	anti-parallel
Strand 7	A	513	515	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	609	610	first strand
Strand 2	A	654	656	anti-parallel
Strand 3	A	663	666	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	614	615	first strand
Strand 2	A	651	652	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	619	620	first strand
Strand 2	A	646	648	anti-parallel
Strand 3	A	673	675	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	624	628	first strand
Strand 2	A	680	684	parallel
Strand 3	A	638	641	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	687	689	first strand
Strand 2	A	714	716	anti-parallel
Strand 3	A	723	725	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	693	697	first strand
Strand 2	A	730	734	parallel
Strand 3	A	706	709	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	737	748	first strand
Strand 2	A	774	784	anti-parallel
Strand 3	A	791	794	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	737	748	first strand
Strand 2	A	774	784	anti-parallel
Strand 3	A	798	803	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	752	756	first strand
Strand 2	A	808	812	parallel
Strand 3	A	765	769	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	358	first strand
Strand 2	B	601	604	anti-parallel
Strand 3	B	413	420	anti-parallel
Strand 4	B	593	595	anti-parallel
Strand 5	B	384	387	anti-parallel
Strand 6	B	370	373	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	358	first strand
Strand 2	B	601	604	anti-parallel
Strand 3	B	413	420	anti-parallel
Strand 4	B	534	541	anti-parallel
Strand 5	B	546	551	anti-parallel
Strand 6	B	554	559	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	368	first strand
Strand 2	B	398	403	anti-parallel
Strand 3	B	572	578	anti-parallel
Strand 4	B	432	438	anti-parallel
Strand 5	B	461	466	anti-parallel
Strand 6	B	487	495	anti-parallel
Strand 7	B	501	504	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	368	first strand
Strand 2	B	398	403	anti-parallel
Strand 3	B	572	578	anti-parallel
Strand 4	B	432	438	anti-parallel
Strand 5	B	461	466	anti-parallel
Strand 6	B	487	495	anti-parallel
Strand 7	B	513	515	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	609	610	first strand
Strand 2	B	654	656	anti-parallel
Strand 3	B	663	666	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	614	616	first strand
Strand 2	B	646	652	anti-parallel
Strand 3	B	619	620	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	614	616	first strand
Strand 2	B	646	652	anti-parallel
Strand 3	B	670	675	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	624	628	first strand
Strand 2	B	680	684	parallel
Strand 3	B	637	641	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	687	689	first strand
Strand 2	B	714	716	anti-parallel
Strand 3	B	723	725	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	693	697	first strand
Strand 2	B	730	734	parallel
Strand 3	B	706	709	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	737	748	first strand
Strand 2	B	774	784	anti-parallel
Strand 3	B	791	794	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	737	748	first strand
Strand 2	B	774	784	anti-parallel
Strand 3	B	798	803	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	752	756	first strand
Strand 2	B	808	812	parallel
Strand 3	B	765	769	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DEO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DEO