Analysis of interatomic Contacts of Structural Units in PDB entry:
8DEQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DEQ entry

There are 8 chains in PDB entry 8DEQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 1	VAL 402
B	TYR 1	VAL 402
C	TYR 1	VAL 402
D	TYR 1	VAL 402
E	TYR 1	VAL 402
F	TYR 1	VAL 402
H	GLN 1	SER 113
L	ASP 1	LYS 107

There are 40 helices in PDB entry 8DEQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	112	116	Right-handed 310
Helix 2	AA2	A	155	159	Right-handed 310
Helix 3	AA3	A	238	246	Right-handed alpha
Helix 4	AA4	A	250	254	Right-handed 310
Helix 5	AA5	A	255	259	Right-handed 310
Helix 6	AA6	A	283	287	Right-handed 310
Helix 7	AA7	B	112	116	Right-handed 310
Helix 8	AA8	B	155	159	Right-handed 310
Helix 9	AA9	B	238	246	Right-handed alpha
Helix 10	AB1	B	250	254	Right-handed 310
Helix 11	AB2	B	255	259	Right-handed 310
Helix 12	AB3	B	283	287	Right-handed 310
Helix 13	AB4	C	112	116	Right-handed 310
Helix 14	AB5	C	155	159	Right-handed 310
Helix 15	AB6	C	238	246	Right-handed alpha
Helix 16	AB7	C	250	254	Right-handed 310
Helix 17	AB8	C	255	259	Right-handed 310
Helix 18	AB9	C	283	287	Right-handed 310
Helix 19	AC1	D	112	116	Right-handed 310
Helix 20	AC2	D	155	159	Right-handed 310
Helix 21	AC3	D	238	246	Right-handed alpha
Helix 22	AC4	D	250	254	Right-handed 310
Helix 23	AC5	D	255	259	Right-handed 310
Helix 24	AC6	D	283	287	Right-handed 310
Helix 25	AC7	E	112	116	Right-handed 310
Helix 26	AC8	E	155	159	Right-handed 310
Helix 27	AC9	E	238	246	Right-handed alpha
Helix 28	AD1	E	250	254	Right-handed 310
Helix 29	AD2	E	255	259	Right-handed 310
Helix 30	AD3	E	283	287	Right-handed 310
Helix 31	AD4	F	112	116	Right-handed 310
Helix 32	AD5	F	155	159	Right-handed 310
Helix 33	AD6	F	238	246	Right-handed alpha
Helix 34	AD7	F	250	254	Right-handed 310
Helix 35	AD8	F	255	259	Right-handed 310
Helix 36	AD9	F	283	287	Right-handed 310
Helix 37	AE1	H	63	65	Right-handed 310
Helix 38	AE2	H	73	75	Right-handed 310
Helix 39	AE3	H	83	87	Right-handed 310
Helix 40	AE4	L	79	83	Right-handed 310

There are 65 sheets in PDB entry 8DEQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8, AG9, AH1, AH2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	8	first strand
Strand 2	A	275	281	anti-parallel
Strand 3	A	160	163	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	21	first strand
Strand 2	A	24	48	anti-parallel
Strand 3	A	119	137	anti-parallel
Strand 4	A	176	180	anti-parallel
Strand 5	A	183	186	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	148	first strand
Strand 2	A	119	137	anti-parallel
Strand 3	A	24	48	anti-parallel
Strand 4	A	267	269	anti-parallel
Strand 5	A	260	262	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	55	first strand
Strand 2	A	101	110	anti-parallel
Strand 3	A	59	61	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	55	first strand
Strand 2	A	101	110	anti-parallel
Strand 3	A	77	82	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	91	92	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	204	first strand
Strand 2	A	214	215	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	221	first strand
Strand 2	A	233	234	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	305	first strand
Strand 2	A	314	322	anti-parallel
Strand 3	A	349	358	anti-parallel
Strand 4	A	337	339	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	346	first strand
Strand 2	A	326	331	anti-parallel
Strand 3	A	364	369	anti-parallel
Strand 4	A	373	377	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	8	first strand
Strand 2	B	275	281	anti-parallel
Strand 3	B	160	163	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	21	first strand
Strand 2	B	24	48	anti-parallel
Strand 3	B	119	137	anti-parallel
Strand 4	B	176	180	anti-parallel
Strand 5	B	183	186	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	148	first strand
Strand 2	B	119	137	anti-parallel
Strand 3	B	24	48	anti-parallel
Strand 4	B	267	269	anti-parallel
Strand 5	B	260	262	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	55	first strand
Strand 2	B	101	110	anti-parallel
Strand 3	B	59	61	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	55	first strand
Strand 2	B	101	110	anti-parallel
Strand 3	B	77	82	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	B	91	92	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	204	first strand
Strand 2	B	214	215	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	221	first strand
Strand 2	B	233	234	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	305	first strand
Strand 2	B	314	322	anti-parallel
Strand 3	B	349	358	anti-parallel
Strand 4	B	337	339	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	346	first strand
Strand 2	B	326	331	anti-parallel
Strand 3	B	364	369	anti-parallel
Strand 4	B	373	377	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	8	first strand
Strand 2	C	275	281	anti-parallel
Strand 3	C	160	163	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	21	first strand
Strand 2	C	24	48	anti-parallel
Strand 3	C	119	137	anti-parallel
Strand 4	C	176	180	anti-parallel
Strand 5	C	183	186	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	148	first strand
Strand 2	C	119	137	anti-parallel
Strand 3	C	24	48	anti-parallel
Strand 4	C	267	269	anti-parallel
Strand 5	C	260	262	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	55	first strand
Strand 2	C	101	110	anti-parallel
Strand 3	C	59	61	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	55	first strand
Strand 2	C	101	110	anti-parallel
Strand 3	C	77	82	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	91	92	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	203	204	first strand
Strand 2	C	214	215	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	220	221	first strand
Strand 2	C	233	234	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	305	first strand
Strand 2	C	314	322	anti-parallel
Strand 3	C	349	358	anti-parallel
Strand 4	C	337	339	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	343	346	first strand
Strand 2	C	326	331	anti-parallel
Strand 3	C	364	369	anti-parallel
Strand 4	C	373	377	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	8	first strand
Strand 2	D	275	281	anti-parallel
Strand 3	D	160	163	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	21	first strand
Strand 2	D	24	48	anti-parallel
Strand 3	D	119	137	anti-parallel
Strand 4	D	176	180	anti-parallel
Strand 5	D	183	186	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	148	first strand
Strand 2	D	119	137	anti-parallel
Strand 3	D	24	48	anti-parallel
Strand 4	D	267	269	anti-parallel
Strand 5	D	260	262	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	55	first strand
Strand 2	D	101	110	anti-parallel
Strand 3	D	59	61	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	51	55	first strand
Strand 2	D	101	110	anti-parallel
Strand 3	D	77	82	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	88	first strand
Strand 2	D	91	92	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	203	204	first strand
Strand 2	D	214	215	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	221	first strand
Strand 2	D	233	234	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	296	305	first strand
Strand 2	D	314	322	anti-parallel
Strand 3	D	349	358	anti-parallel
Strand 4	D	337	339	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	343	346	first strand
Strand 2	D	326	331	anti-parallel
Strand 3	D	364	369	anti-parallel
Strand 4	D	373	377	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2	8	first strand
Strand 2	E	275	281	anti-parallel
Strand 3	E	160	163	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	21	first strand
Strand 2	E	24	48	anti-parallel
Strand 3	E	119	137	anti-parallel
Strand 4	E	176	180	anti-parallel
Strand 5	E	183	186	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	148	first strand
Strand 2	E	119	137	anti-parallel
Strand 3	E	24	48	anti-parallel
Strand 4	E	267	269	anti-parallel
Strand 5	E	260	262	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	55	first strand
Strand 2	E	101	110	anti-parallel
Strand 3	E	59	61	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	55	first strand
Strand 2	E	101	110	anti-parallel
Strand 3	E	77	82	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	88	first strand
Strand 2	E	91	92	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	203	204	first strand
Strand 2	E	214	215	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	220	221	first strand
Strand 2	E	233	234	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	296	305	first strand
Strand 2	E	314	322	anti-parallel
Strand 3	E	349	358	anti-parallel
Strand 4	E	337	339	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	343	346	first strand
Strand 2	E	326	331	anti-parallel
Strand 3	E	364	369	anti-parallel
Strand 4	E	373	377	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	8	first strand
Strand 2	F	275	281	anti-parallel
Strand 3	F	160	163	anti-parallel

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There are 5 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	21	first strand
Strand 2	F	24	48	anti-parallel
Strand 3	F	119	137	anti-parallel
Strand 4	F	176	180	anti-parallel
Strand 5	F	183	186	anti-parallel

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There are 5 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	140	148	first strand
Strand 2	F	119	137	anti-parallel
Strand 3	F	24	48	anti-parallel
Strand 4	F	267	269	anti-parallel
Strand 5	F	260	262	anti-parallel

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There are 3 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	55	first strand
Strand 2	F	101	110	anti-parallel
Strand 3	F	59	61	anti-parallel

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There are 3 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	55	first strand
Strand 2	F	101	110	anti-parallel
Strand 3	F	77	82	anti-parallel

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There are 2 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	87	88	first strand
Strand 2	F	91	92	anti-parallel

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There are 2 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	203	204	first strand
Strand 2	F	214	215	anti-parallel

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There are 2 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	220	221	first strand
Strand 2	F	233	234	anti-parallel

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There are 4 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	296	305	first strand
Strand 2	F	314	322	anti-parallel
Strand 3	F	349	358	anti-parallel
Strand 4	F	337	339	anti-parallel

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There are 4 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	343	346	first strand
Strand 2	F	326	331	anti-parallel
Strand 3	F	364	369	anti-parallel
Strand 4	F	373	377	anti-parallel

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There are 4 strands in AG7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AG8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	93	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AG9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AH1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AH2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	102	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	97	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DEQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DEQ