Analysis of interatomic Contacts of Structural Units in PDB entry:
8DES


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DES entry

There are 2 chains in PDB entry 8DES (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 4PHE 566
E
 ALA 30LEU 39
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8DES. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 19Right-handed alpha
Helix 2
AA2
A
93 95Right-handed 310
Helix 3
AA3
A
98 103Right-handed alpha
Helix 4
AA4
A
131 137Right-handed alpha
Helix 5
AA5
A
149 163Right-handed alpha
Helix 6
AA6
A
319 340Right-handed alpha
Helix 7
AA7
A
342 351Right-handed alpha
Helix 8
AA8
A
357 361Right-handed 310
Helix 9
AA9
A
433 438Right-handed alpha
Helix 10
AB1
A
440 444Right-handed 310
Helix 11
AB2
A
446 450Right-handed 310
Helix 12
AB3
A
460 462Right-handed 310
Helix 13
AB4
A
467 471Right-handed 310
Helix 14
AB5
A
480 485Right-handed alpha
Helix 15
AB6
A
502 506Right-handed 310
Helix 16
AB7
A
518 523Right-handed alpha
Helix 17
AB8
A
527 532Right-handed alpha
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There are 5 sheets in PDB entry 8DES. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
540 552anti-parallel
Strand 3
A
59 70anti-parallel
Strand 4
A
393 402anti-parallel
Strand 5
A
374 379anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 41first strand
Strand 2
A
540 552anti-parallel
Strand 3
A
59 70anti-parallel
Strand 4
A
406 409anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 54first strand
Strand 2
A
414 424anti-parallel
Strand 3
A
81 91anti-parallel
Strand 4
A
364 372anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 148first strand
Strand 2
A
119 121anti-parallel
Strand 3
A
181 182parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 458first strand
Strand 2
A
473 477anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il