Analysis of interatomic Contacts of Structural Units in PDB entry:
8DEV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DEV entry

There are 6 chains in PDB entry 8DEV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLU 1046
B	MET 1	THR 1043
C	MET 1	GLU 1042
D	THR 3	THR 3
D	LEU 8	LEU 8
D	THR 11	THR 11

There are112 helices in PDB entry 8DEV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	29	Right-handed alpha
Helix 2	AA2	A	53	61	Right-handed alpha
Helix 3	AA3	A	61	68	Right-handed alpha
Helix 4	AA4	A	99	113	Right-handed alpha
Helix 5	AA5	A	114	118	Right-handed 310
Helix 6	AA6	A	119	126	Right-handed alpha
Helix 7	AA7	A	148	160	Right-handed alpha
Helix 8	AA8	A	160	165	Right-handed alpha
Helix 9	AA9	A	197	207	Right-handed alpha
Helix 10	AB1	A	240	246	Right-handed alpha
Helix 11	AB2	A	296	312	Right-handed alpha
Helix 12	AB3	A	313	315	Right-handed 310
Helix 13	AB4	A	328	358	Right-handed alpha
Helix 14	AB5	A	363	385	Right-handed alpha
Helix 15	AB6	A	390	421	Right-handed alpha
Helix 16	AB7	A	424	452	Right-handed alpha
Helix 17	AB8	A	453	456	Right-handed 310
Helix 18	AB9	A	461	494	Right-handed alpha
Helix 19	AC1	A	509	532	Right-handed alpha
Helix 20	AC2	A	535	555	Right-handed alpha
Helix 21	AC3	A	580	598	Right-handed alpha
Helix 22	AC4	A	628	632	Right-handed 310
Helix 23	AC5	A	634	637	Right-handed 310
Helix 24	AC6	A	638	654	Right-handed alpha
Helix 25	AC7	A	687	704	Right-handed alpha
Helix 26	AC8	A	729	734	Right-handed alpha
Helix 27	AC9	A	740	752	Right-handed alpha
Helix 28	AD1	A	774	778	Right-handed 310
Helix 29	AD2	A	779	783	Right-handed 310
Helix 30	AD3	A	797	801	Right-handed 310
Helix 31	AD4	A	833	848	Right-handed alpha
Helix 32	AD5	A	859	865	Right-handed alpha
Helix 33	AD6	A	869	890	Right-handed alpha
Helix 34	AD7	A	894	900	Right-handed alpha
Helix 35	AD8	A	901	924	Right-handed alpha
Helix 36	AD9	A	932	958	Right-handed alpha
Helix 37	AE1	A	968	998	Right-handed alpha
Helix 38	AE2	A	1003	1041	Right-handed alpha
Helix 39	AE3	B	8	28	Right-handed alpha
Helix 40	AE4	B	53	61	Right-handed alpha
Helix 41	AE5	B	61	68	Right-handed alpha
Helix 42	AE6	B	99	112	Right-handed alpha
Helix 43	AE7	B	113	118	Right-handed 310
Helix 44	AE8	B	119	126	Right-handed alpha
Helix 45	AE9	B	148	160	Right-handed alpha
Helix 46	AF1	B	160	165	Right-handed alpha
Helix 47	AF2	B	187	195	Right-handed alpha
Helix 48	AF3	B	197	209	Right-handed alpha
Helix 49	AF4	B	240	246	Right-handed alpha
Helix 50	AF5	B	296	312	Right-handed alpha
Helix 51	AF6	B	313	315	Right-handed 310
Helix 52	AF7	B	328	358	Right-handed alpha
Helix 53	AF8	B	364	385	Right-handed alpha
Helix 54	AF9	B	389	422	Right-handed alpha
Helix 55	AG1	B	424	452	Right-handed alpha
Helix 56	AG2	B	453	457	Right-handed 310
Helix 57	AG3	B	459	495	Right-handed alpha
Helix 58	AG4	B	509	533	Right-handed alpha
Helix 59	AG5	B	535	555	Right-handed alpha
Helix 60	AG6	B	580	595	Right-handed alpha
Helix 61	AG7	B	596	598	Right-handed 310
Helix 62	AG8	B	628	633	Right-handed 310
Helix 63	AG9	B	638	652	Right-handed alpha
Helix 64	AH1	B	687	704	Right-handed alpha
Helix 65	AH2	B	729	736	Right-handed alpha
Helix 66	AH3	B	740	751	Right-handed alpha
Helix 67	AH4	B	774	777	Right-handed 310
Helix 68	AH5	B	779	783	Right-handed 310
Helix 69	AH6	B	833	848	Right-handed alpha
Helix 70	AH7	B	860	865	Right-handed alpha
Helix 71	AH8	B	869	890	Right-handed alpha
Helix 72	AH9	B	893	900	Right-handed alpha
Helix 73	AI1	B	901	922	Right-handed alpha
Helix 74	AI2	B	932	962	Right-handed alpha
Helix 75	AI3	B	966	994	Right-handed alpha
Helix 76	AI4	B	995	998	Right-handed 310
Helix 77	AI5	B	1005	1040	Right-handed alpha
Helix 78	AI6	C	2	6	Right-handed alpha
Helix 79	AI7	C	8	28	Right-handed alpha
Helix 80	AI8	C	55	61	Right-handed alpha
Helix 81	AI9	C	61	69	Right-handed alpha
Helix 82	AJ1	C	99	113	Right-handed alpha
Helix 83	AJ2	C	119	126	Right-handed alpha
Helix 84	AJ3	C	148	166	Right-handed alpha
Helix 85	AJ4	C	187	194	Right-handed alpha
Helix 86	AJ5	C	197	207	Right-handed alpha
Helix 87	AJ6	C	240	245	Right-handed alpha
Helix 88	AJ7	C	296	312	Right-handed alpha
Helix 89	AJ8	C	329	358	Right-handed alpha
Helix 90	AJ9	C	363	385	Right-handed alpha
Helix 91	AK1	C	389	400	Right-handed alpha
Helix 92	AK2	C	404	422	Right-handed alpha
Helix 93	AK3	C	424	436	Right-handed alpha
Helix 94	AK4	C	438	452	Right-handed alpha
Helix 95	AK5	C	453	456	Right-handed 310
Helix 96	AK6	C	459	494	Right-handed alpha
Helix 97	AK7	C	508	532	Right-handed alpha
Helix 98	AK8	C	536	555	Right-handed alpha
Helix 99	AK9	C	580	596	Right-handed alpha
Helix 100	AL1	C	638	654	Right-handed alpha
Helix 101	AL2	C	687	703	Right-handed alpha
Helix 102	AL3	C	729	736	Right-handed alpha
Helix 103	AL4	C	740	751	Right-handed alpha
Helix 104	AL5	C	780	785	Right-handed alpha
Helix 105	AL6	C	833	849	Right-handed alpha
Helix 106	AL7	C	858	866	Right-handed alpha
Helix 107	AL8	C	868	890	Right-handed alpha
Helix 108	AL9	C	893	899	Right-handed alpha
Helix 109	AM1	C	901	924	Right-handed alpha
Helix 110	AM2	C	932	962	Right-handed alpha
Helix 111	AM3	C	966	998	Right-handed alpha
Helix 112	AM4	C	1003	1040	Right-handed alpha

There are 23 sheets in PDB entry 8DEV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	130	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	75	83	anti-parallel
Strand 5	A	812	816	anti-parallel
Strand 6	A	819	826	anti-parallel
Strand 7	A	714	715	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	130	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	75	83	anti-parallel
Strand 5	A	812	816	anti-parallel
Strand 6	A	819	826	anti-parallel
Strand 7	A	676	682	anti-parallel
Strand 8	A	852	856	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	175	first strand
Strand 2	A	286	291	anti-parallel
Strand 3	A	136	141	anti-parallel
Strand 4	A	322	326	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	270	first strand
Strand 2	A	180	186	anti-parallel
Strand 3	A	765	772	parallel
Strand 4	A	754	760	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	217	first strand
Strand 2	A	230	232	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	250	first strand
Strand 2	A	258	259	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	283	first strand
Strand 2	A	276	279	anti-parallel
Strand 3	A	601	608	anti-parallel
Strand 4	A	619	626	anti-parallel
Strand 5	A	568	574	anti-parallel
Strand 6	A	660	662	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	805	809	first strand
Strand 2	A	721	725	anti-parallel
Strand 3	C	232	233	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	48	first strand
Strand 2	B	87	94	anti-parallel
Strand 3	B	75	83	anti-parallel
Strand 4	B	812	816	anti-parallel
Strand 5	B	819	826	anti-parallel
Strand 6	B	714	715	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	42	44	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	75	83	anti-parallel
Strand 5	B	812	816	anti-parallel
Strand 6	B	819	826	anti-parallel
Strand 7	B	676	682	anti-parallel
Strand 8	B	852	856	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	175	first strand
Strand 2	B	282	291	anti-parallel
Strand 3	B	136	143	anti-parallel
Strand 4	B	320	322	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	175	first strand
Strand 2	B	282	291	anti-parallel
Strand 3	B	276	279	anti-parallel
Strand 4	B	601	608	anti-parallel
Strand 5	B	619	626	anti-parallel
Strand 6	B	568	574	anti-parallel
Strand 7	B	658	662	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	269	first strand
Strand 2	B	181	186	anti-parallel
Strand 3	B	764	772	parallel
Strand 4	B	754	761	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	217	first strand
Strand 2	B	230	234	anti-parallel
Strand 3	C	722	728	parallel
Strand 4	C	802	808	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	250	first strand
Strand 2	B	258	259	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	721	723	first strand
Strand 2	B	807	809	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	726	728	first strand
Strand 2	B	802	804	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	788	789	first strand
Strand 2	B	795	796	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	130	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	75	83	anti-parallel
Strand 5	C	812	816	anti-parallel
Strand 6	C	819	826	anti-parallel
Strand 7	C	676	682	anti-parallel
Strand 8	C	852	856	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	173	first strand
Strand 2	C	285	291	anti-parallel
Strand 3	C	136	143	anti-parallel
Strand 4	C	320	326	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	270	first strand
Strand 2	C	180	186	anti-parallel
Strand 3	C	765	772	parallel
Strand 4	C	754	760	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	251	first strand
Strand 2	C	257	259	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	283	first strand
Strand 2	C	276	279	anti-parallel
Strand 3	C	601	608	anti-parallel
Strand 4	C	619	626	anti-parallel
Strand 5	C	568	574	anti-parallel
Strand 6	C	658	662	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DEV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DEV