Analysis of interatomic Contacts of Structural Units in PDB entry:
8DEW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DEW entry

There are 4 chains in PDB entry 8DEW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 1058
B	MET 1	PHE 1040
C	MET 1	GLY 1058
D	PHE 17	VAL 32

There are120 helices in PDB entry 8DEW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	7	Right-handed alpha
Helix 2	AA2	A	8	29	Right-handed alpha
Helix 3	AA3	A	53	61	Right-handed alpha
Helix 4	AA4	A	61	67	Right-handed alpha
Helix 5	AA5	A	99	115	Right-handed alpha
Helix 6	AA6	A	116	118	Right-handed 310
Helix 7	AA7	A	119	126	Right-handed alpha
Helix 8	AA8	A	148	166	Right-handed alpha
Helix 9	AA9	A	187	195	Right-handed alpha
Helix 10	AB1	A	197	209	Right-handed alpha
Helix 11	AB2	A	240	246	Right-handed alpha
Helix 12	AB3	A	296	312	Right-handed alpha
Helix 13	AB4	A	313	315	Right-handed 310
Helix 14	AB5	A	327	358	Right-handed alpha
Helix 15	AB6	A	359	384	Right-handed alpha
Helix 16	AB7	A	389	422	Right-handed alpha
Helix 17	AB8	A	424	452	Right-handed alpha
Helix 18	AB9	A	453	456	Right-handed 310
Helix 19	AC1	A	461	495	Right-handed alpha
Helix 20	AC2	A	508	533	Right-handed alpha
Helix 21	AC3	A	535	555	Right-handed alpha
Helix 22	AC4	A	580	597	Right-handed alpha
Helix 23	AC5	A	638	654	Right-handed alpha
Helix 24	AC6	A	667	672	Right-handed alpha
Helix 25	AC7	A	687	706	Right-handed alpha
Helix 26	AC8	A	709	713	Right-handed 310
Helix 27	AC9	A	729	734	Right-handed alpha
Helix 28	AD1	A	739	752	Right-handed alpha
Helix 29	AD2	A	774	777	Right-handed 310
Helix 30	AD3	A	780	785	Right-handed alpha
Helix 31	AD4	A	833	848	Right-handed alpha
Helix 32	AD5	A	858	866	Right-handed alpha
Helix 33	AD6	A	869	890	Right-handed alpha
Helix 34	AD7	A	893	900	Right-handed alpha
Helix 35	AD8	A	901	924	Right-handed alpha
Helix 36	AD9	A	932	963	Right-handed alpha
Helix 37	AE1	A	966	993	Right-handed alpha
Helix 38	AE2	A	993	998	Right-handed alpha
Helix 39	AE3	A	1003	1040	Right-handed alpha
Helix 40	AE4	A	1043	1058	Right-handed alpha
Helix 41	AE5	B	2	7	Right-handed alpha
Helix 42	AE6	B	8	29	Right-handed alpha
Helix 43	AE7	B	53	61	Right-handed alpha
Helix 44	AE8	B	61	68	Right-handed alpha
Helix 45	AE9	B	99	115	Right-handed alpha
Helix 46	AF1	B	116	118	Right-handed 310
Helix 47	AF2	B	119	126	Right-handed alpha
Helix 48	AF3	B	148	165	Right-handed alpha
Helix 49	AF4	B	187	195	Right-handed alpha
Helix 50	AF5	B	197	209	Right-handed alpha
Helix 51	AF6	B	240	246	Right-handed alpha
Helix 52	AF7	B	296	312	Right-handed alpha
Helix 53	AF8	B	313	315	Right-handed 310
Helix 54	AF9	B	327	358	Right-handed alpha
Helix 55	AG1	B	360	362	Right-handed 310
Helix 56	AG2	B	363	384	Right-handed alpha
Helix 57	AG3	B	389	422	Right-handed alpha
Helix 58	AG4	B	424	452	Right-handed alpha
Helix 59	AG5	B	453	456	Right-handed 310
Helix 60	AG6	B	459	495	Right-handed alpha
Helix 61	AG7	B	508	534	Right-handed alpha
Helix 62	AG8	B	534	555	Right-handed alpha
Helix 63	AG9	B	580	597	Right-handed alpha
Helix 64	AH1	B	638	654	Right-handed alpha
Helix 65	AH2	B	687	705	Right-handed alpha
Helix 66	AH3	B	709	713	Right-handed 310
Helix 67	AH4	B	729	736	Right-handed alpha
Helix 68	AH5	B	741	751	Right-handed alpha
Helix 69	AH6	B	773	777	Right-handed 310
Helix 70	AH7	B	779	785	Right-handed 310
Helix 71	AH8	B	798	801	Right-handed alpha
Helix 72	AH9	B	833	848	Right-handed alpha
Helix 73	AI1	B	858	865	Right-handed alpha
Helix 74	AI2	B	867	890	Right-handed alpha
Helix 75	AI3	B	893	900	Right-handed alpha
Helix 76	AI4	B	901	924	Right-handed alpha
Helix 77	AI5	B	932	964	Right-handed alpha
Helix 78	AI6	B	966	998	Right-handed alpha
Helix 79	AI7	B	1003	1040	Right-handed alpha
Helix 80	AI8	C	2	8	Right-handed alpha
Helix 81	AI9	C	8	29	Right-handed alpha
Helix 82	AJ1	C	53	61	Right-handed alpha
Helix 83	AJ2	C	61	69	Right-handed alpha
Helix 84	AJ3	C	99	115	Right-handed alpha
Helix 85	AJ4	C	119	126	Right-handed alpha
Helix 86	AJ5	C	148	166	Right-handed alpha
Helix 87	AJ6	C	187	195	Right-handed alpha
Helix 88	AJ7	C	197	209	Right-handed alpha
Helix 89	AJ8	C	240	246	Right-handed alpha
Helix 90	AJ9	C	296	312	Right-handed alpha
Helix 91	AK1	C	313	315	Right-handed 310
Helix 92	AK2	C	327	358	Right-handed alpha
Helix 93	AK3	C	359	384	Right-handed alpha
Helix 94	AK4	C	389	422	Right-handed alpha
Helix 95	AK5	C	424	452	Right-handed alpha
Helix 96	AK6	C	453	456	Right-handed 310
Helix 97	AK7	C	458	495	Right-handed alpha
Helix 98	AK8	C	508	534	Right-handed alpha
Helix 99	AK9	C	534	555	Right-handed alpha
Helix 100	AL1	C	580	598	Right-handed alpha
Helix 101	AL2	C	628	632	Right-handed 310
Helix 102	AL3	C	638	654	Right-handed alpha
Helix 103	AL4	C	667	671	Right-handed 310
Helix 104	AL5	C	687	703	Right-handed alpha
Helix 105	AL6	C	729	736	Right-handed alpha
Helix 106	AL7	C	739	752	Right-handed alpha
Helix 107	AL8	C	774	777	Right-handed 310
Helix 108	AL9	C	779	785	Right-handed alpha
Helix 109	AM1	C	798	801	Right-handed alpha
Helix 110	AM2	C	833	849	Right-handed alpha
Helix 111	AM3	C	858	890	Right-handed alpha
Helix 112	AM4	C	893	900	Right-handed alpha
Helix 113	AM5	C	901	924	Right-handed alpha
Helix 114	AM6	C	932	962	Right-handed alpha
Helix 115	AM7	C	963	965	Right-handed 310
Helix 116	AM8	C	966	993	Right-handed alpha
Helix 117	AM9	C	993	998	Right-handed alpha
Helix 118	AN1	C	1003	1040	Right-handed alpha
Helix 119	AN2	C	1043	1058	Right-handed alpha
Helix 120	AN3	D	18	32	Right-handed alpha

There are 23 sheets in PDB entry 8DEW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	130	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	75	83	anti-parallel
Strand 5	A	812	816	anti-parallel
Strand 6	A	819	826	anti-parallel
Strand 7	A	714	715	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	130	first strand
Strand 2	A	42	48	anti-parallel
Strand 3	A	87	94	anti-parallel
Strand 4	A	75	83	anti-parallel
Strand 5	A	812	816	anti-parallel
Strand 6	A	819	826	anti-parallel
Strand 7	A	676	682	anti-parallel
Strand 8	A	852	856	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	175	first strand
Strand 2	A	286	292	anti-parallel
Strand 3	A	132	141	anti-parallel
Strand 4	A	322	326	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	270	first strand
Strand 2	A	180	186	anti-parallel
Strand 3	A	764	772	parallel
Strand 4	A	754	761	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	217	first strand
Strand 2	A	230	234	anti-parallel
Strand 3	B	721	728	parallel
Strand 4	B	802	809	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	251	first strand
Strand 2	A	257	259	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	276	279	anti-parallel
Strand 3	A	601	608	anti-parallel
Strand 4	A	619	626	anti-parallel
Strand 5	A	568	574	anti-parallel
Strand 6	A	658	662	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	805	809	first strand
Strand 2	A	721	725	anti-parallel
Strand 3	C	231	233	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	48	first strand
Strand 2	B	87	94	anti-parallel
Strand 3	B	75	83	anti-parallel
Strand 4	B	812	816	anti-parallel
Strand 5	B	819	825	anti-parallel
Strand 6	B	714	715	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	42	44	anti-parallel
Strand 3	B	87	94	anti-parallel
Strand 4	B	75	83	anti-parallel
Strand 5	B	812	816	anti-parallel
Strand 6	B	819	825	anti-parallel
Strand 7	B	678	682	anti-parallel
Strand 8	B	852	856	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	175	first strand
Strand 2	B	282	291	anti-parallel
Strand 3	B	136	143	anti-parallel
Strand 4	B	320	322	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	175	first strand
Strand 2	B	282	291	anti-parallel
Strand 3	B	276	279	anti-parallel
Strand 4	B	601	610	anti-parallel
Strand 5	B	615	626	anti-parallel
Strand 6	B	568	574	anti-parallel
Strand 7	B	658	662	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	270	first strand
Strand 2	B	180	186	anti-parallel
Strand 3	B	764	770	parallel
Strand 4	B	754	761	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	217	first strand
Strand 2	B	230	234	anti-parallel
Strand 3	C	721	728	parallel
Strand 4	C	802	809	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	250	first strand
Strand 2	B	258	259	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	787	789	first strand
Strand 2	B	795	797	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	130	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	75	83	anti-parallel
Strand 5	C	812	816	anti-parallel
Strand 6	C	819	826	anti-parallel
Strand 7	C	714	715	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	127	130	first strand
Strand 2	C	42	48	anti-parallel
Strand 3	C	87	94	anti-parallel
Strand 4	C	75	83	anti-parallel
Strand 5	C	812	816	anti-parallel
Strand 6	C	819	826	anti-parallel
Strand 7	C	676	682	anti-parallel
Strand 8	C	852	857	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	175	first strand
Strand 2	C	282	291	anti-parallel
Strand 3	C	138	144	anti-parallel
Strand 4	C	319	326	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	175	first strand
Strand 2	C	282	291	anti-parallel
Strand 3	C	276	279	anti-parallel
Strand 4	C	601	611	anti-parallel
Strand 5	C	614	626	anti-parallel
Strand 6	C	568	574	anti-parallel
Strand 7	C	658	660	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	264	270	first strand
Strand 2	C	180	186	anti-parallel
Strand 3	C	765	772	parallel
Strand 4	C	754	760	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	251	first strand
Strand 2	C	257	259	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	787	788	first strand
Strand 2	C	796	797	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DEW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DEW