Analysis of interatomic Contacts of Structural Units in PDB entry:
8DEY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DEY entry

There are 6 chains in PDB entry 8DEY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 71	LEU 442
B	SER 2	HIS 1140
C	SER 136	VAL 192
D	THR 71	LEU 442
E	SER 2	HIS 1140
F	SER 136	VAL 192

There are 51 helices in PDB entry 8DEY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	103	114	Right-handed alpha
Helix 2	AA2	A	148	152	Right-handed 310
Helix 3	AA3	A	199	206	Right-handed 310
Helix 4	AA4	A	221	232	Right-handed alpha
Helix 5	AA5	A	233	238	Right-handed 310
Helix 6	AA6	A	241	247	Right-handed alpha
Helix 7	AA7	A	249	258	Right-handed alpha
Helix 8	AA8	A	268	273	Right-handed alpha
Helix 9	AA9	A	276	286	Right-handed alpha
Helix 10	AB1	A	291	300	Right-handed alpha
Helix 11	AB2	A	303	318	Right-handed alpha
Helix 12	AB3	A	333	337	Right-handed 310
Helix 13	AB4	B	250	254	Right-handed 310
Helix 14	AB5	B	381	384	Right-handed 310
Helix 15	AB6	B	755	759	Right-handed 310
Helix 16	AB7	B	768	773	Right-handed alpha
Helix 17	AB8	B	1044	1062	Right-handed alpha
Helix 18	AB9	B	1064	1068	Right-handed 310
Helix 19	AC1	B	1069	1074	Right-handed alpha
Helix 20	AC2	B	1091	1096	Right-handed alpha
Helix 21	AC3	B	1097	1100	Right-handed 310
Helix 22	AC4	B	1101	1110	Right-handed alpha
Helix 23	AC5	B	1125	1138	Right-handed alpha
Helix 24	AC6	C	151	164	Right-handed alpha
Helix 25	AC7	C	179	192	Right-handed alpha
Helix 26	AC8	D	103	114	Right-handed alpha
Helix 27	AC9	D	148	152	Right-handed 310
Helix 28	AD1	D	199	201	Right-handed 310
Helix 29	AD2	D	202	207	Right-handed alpha
Helix 30	AD3	D	221	231	Right-handed alpha
Helix 31	AD4	D	232	238	Right-handed 310
Helix 32	AD5	D	241	247	Right-handed alpha
Helix 33	AD6	D	249	258	Right-handed alpha
Helix 34	AD7	D	268	273	Right-handed alpha
Helix 35	AD8	D	276	286	Right-handed alpha
Helix 36	AD9	D	291	298	Right-handed alpha
Helix 37	AE1	D	303	318	Right-handed alpha
Helix 38	AE2	D	333	337	Right-handed 310
Helix 39	AE3	E	250	254	Right-handed 310
Helix 40	AE4	E	381	384	Right-handed 310
Helix 41	AE5	E	755	759	Right-handed 310
Helix 42	AE6	E	768	773	Right-handed alpha
Helix 43	AE7	E	1044	1059	Right-handed alpha
Helix 44	AE8	E	1064	1068	Right-handed 310
Helix 45	AE9	E	1069	1074	Right-handed alpha
Helix 46	AF1	E	1091	1096	Right-handed alpha
Helix 47	AF2	E	1097	1100	Right-handed 310
Helix 48	AF3	E	1101	1110	Right-handed alpha
Helix 49	AF4	E	1125	1138	Right-handed alpha
Helix 50	AF5	F	151	164	Right-handed alpha
Helix 51	AF6	F	179	192	Right-handed alpha

There are 47 sheets in PDB entry 8DEY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	83	first strand
Strand 2	A	178	184	anti-parallel
Strand 3	A	155	172	anti-parallel
Strand 4	A	96	101	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	83	first strand
Strand 2	A	178	184	anti-parallel
Strand 3	A	155	172	anti-parallel
Strand 4	A	132	144	anti-parallel
Strand 5	A	119	127	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	330	332	first strand
Strand 2	A	321	323	anti-parallel
Strand 3	A	422	423	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	350	first strand
Strand 2	A	356	360	anti-parallel
Strand 3	A	417	418	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	375	first strand
Strand 2	A	384	391	anti-parallel
Strand 3	A	397	404	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1004	1009	first strand
Strand 2	B	1025	1032	anti-parallel
Strand 3	B	1037	1042	anti-parallel
Strand 4	B	4	10	anti-parallel
Strand 5	B	1088	1090	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	21	first strand
Strand 2	B	30	35	anti-parallel
Strand 3	B	38	44	anti-parallel
Strand 4	B	49	56	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	67	first strand
Strand 2	B	76	81	anti-parallel
Strand 3	B	85	94	anti-parallel
Strand 4	B	97	107	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	124	first strand
Strand 2	B	131	134	anti-parallel
Strand 3	B	139	143	anti-parallel
Strand 4	B	155	158	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	169	first strand
Strand 2	B	177	184	anti-parallel
Strand 3	B	187	196	anti-parallel
Strand 4	B	201	204	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	218	221	first strand
Strand 2	B	229	232	anti-parallel
Strand 3	B	237	241	anti-parallel
Strand 4	B	244	248	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	263	first strand
Strand 2	B	270	275	anti-parallel
Strand 3	B	279	286	anti-parallel
Strand 4	B	299	307	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	316	first strand
Strand 2	B	321	326	anti-parallel
Strand 3	B	331	336	anti-parallel
Strand 4	B	347	353	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	365	first strand
Strand 2	B	374	379	anti-parallel
Strand 3	B	386	391	anti-parallel
Strand 4	B	711	716	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	720	727	first strand
Strand 2	B	732	743	anti-parallel
Strand 3	B	749	751	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	720	727	first strand
Strand 2	B	732	743	anti-parallel
Strand 3	B	785	795	anti-parallel
Strand 4	B	801	806	anti-parallel
Strand 5	B	763	765	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	811	820	first strand
Strand 2	B	827	835	anti-parallel
Strand 3	B	846	854	anti-parallel
Strand 4	B	857	866	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	870	876	first strand
Strand 2	B	879	884	anti-parallel
Strand 3	B	887	893	anti-parallel
Strand 4	B	899	906	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	913	917	first strand
Strand 2	B	920	924	anti-parallel
Strand 3	B	930	936	anti-parallel
Strand 4	B	941	948	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	956	959	first strand
Strand 2	B	964	968	anti-parallel
Strand 3	B	973	978	anti-parallel
Strand 4	B	996	999	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1076	1077	first strand
Strand 2	B	1082	1083	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1113	1115	first strand
Strand 2	B	1121	1123	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	140	141	first strand
Strand 2	C	148	149	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	169	first strand
Strand 2	C	176	177	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	83	first strand
Strand 2	D	178	184	anti-parallel
Strand 3	D	156	172	anti-parallel
Strand 4	D	96	100	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	83	first strand
Strand 2	D	178	184	anti-parallel
Strand 3	D	156	172	anti-parallel
Strand 4	D	132	144	anti-parallel
Strand 5	D	122	127	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	330	332	first strand
Strand 2	D	321	323	anti-parallel
Strand 3	D	422	423	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	350	first strand
Strand 2	D	356	362	anti-parallel
Strand 3	D	413	418	anti-parallel
Strand 4	D	397	404	anti-parallel
Strand 5	D	384	391	anti-parallel
Strand 6	D	368	369	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1004	1008	first strand
Strand 2	E	1025	1032	anti-parallel
Strand 3	E	1037	1042	anti-parallel
Strand 4	E	4	10	anti-parallel
Strand 5	E	1088	1090	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	21	first strand
Strand 2	E	30	35	anti-parallel
Strand 3	E	38	44	anti-parallel
Strand 4	E	49	56	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	67	first strand
Strand 2	E	76	81	anti-parallel
Strand 3	E	85	94	anti-parallel
Strand 4	E	97	107	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	124	first strand
Strand 2	E	131	134	anti-parallel
Strand 3	E	139	143	anti-parallel
Strand 4	E	155	158	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	169	first strand
Strand 2	E	177	184	anti-parallel
Strand 3	E	187	196	anti-parallel
Strand 4	E	201	204	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	218	221	first strand
Strand 2	E	229	232	anti-parallel
Strand 3	E	237	241	anti-parallel
Strand 4	E	244	248	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	258	263	first strand
Strand 2	E	270	275	anti-parallel
Strand 3	E	279	286	anti-parallel
Strand 4	E	299	307	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	313	318	first strand
Strand 2	E	321	325	anti-parallel
Strand 3	E	331	336	anti-parallel
Strand 4	E	347	353	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	359	365	first strand
Strand 2	E	374	379	anti-parallel
Strand 3	E	386	391	anti-parallel
Strand 4	E	711	716	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	720	727	first strand
Strand 2	E	732	743	anti-parallel
Strand 3	E	749	751	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	720	727	first strand
Strand 2	E	732	743	anti-parallel
Strand 3	E	785	795	anti-parallel
Strand 4	E	801	806	anti-parallel
Strand 5	E	763	765	parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	811	821	first strand
Strand 2	E	824	835	anti-parallel
Strand 3	E	846	854	anti-parallel
Strand 4	E	857	866	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	870	876	first strand
Strand 2	E	879	884	anti-parallel
Strand 3	E	887	893	anti-parallel
Strand 4	E	899	906	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	913	917	first strand
Strand 2	E	920	924	anti-parallel
Strand 3	E	930	936	anti-parallel
Strand 4	E	941	948	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	954	959	first strand
Strand 2	E	964	969	anti-parallel
Strand 3	E	973	978	anti-parallel
Strand 4	E	996	999	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1076	1077	first strand
Strand 2	E	1082	1083	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1113	1115	first strand
Strand 2	E	1121	1123	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	140	141	first strand
Strand 2	F	148	149	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	168	169	first strand
Strand 2	F	176	177	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DEY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DEY