Analysis of interatomic Contacts of Structural Units in PDB entry:
8DF2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DF2 entry

There are 4 chains in PDB entry 8DF2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 20	ALA 399
B	GLY 19	ALA 399
C	GLU 18	ALA 399
D	ALA 20	ALA 399

There are 44 helices in PDB entry 8DF2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	51	Right-handed alpha
Helix 2	AA2	A	75	99	Right-handed alpha
Helix 3	AA3	A	125	129	Right-handed 310
Helix 4	AA4	A	133	149	Right-handed alpha
Helix 5	AA5	A	152	155	Right-handed 310
Helix 6	AA6	A	191	197	Right-handed 310
Helix 7	AA7	A	209	229	Right-handed alpha
Helix 8	AA8	A	250	254	Right-handed 310
Helix 9	AA9	A	256	260	Right-handed 310
Helix 10	AB1	A	269	277	Right-handed alpha
Helix 11	AB2	A	279	284	Right-handed alpha
Helix 12	AB3	B	19	23	Right-handed 310
Helix 13	AB4	B	32	51	Right-handed alpha
Helix 14	AB5	B	75	98	Right-handed alpha
Helix 15	AB6	B	125	129	Right-handed 310
Helix 16	AB7	B	133	149	Right-handed alpha
Helix 17	AB8	B	152	155	Right-handed 310
Helix 18	AB9	B	191	197	Right-handed 310
Helix 19	AC1	B	209	229	Right-handed alpha
Helix 20	AC2	B	250	254	Right-handed 310
Helix 21	AC3	B	256	260	Right-handed 310
Helix 22	AC4	B	269	277	Right-handed alpha
Helix 23	AC5	B	279	284	Right-handed alpha
Helix 24	AC6	C	19	23	Right-handed 310
Helix 25	AC7	C	32	51	Right-handed alpha
Helix 26	AC8	C	75	98	Right-handed alpha
Helix 27	AC9	C	125	129	Right-handed 310
Helix 28	AD1	C	133	149	Right-handed alpha
Helix 29	AD2	C	152	155	Right-handed 310
Helix 30	AD3	C	191	197	Right-handed 310
Helix 31	AD4	C	210	229	Right-handed alpha
Helix 32	AD5	C	250	254	Right-handed 310
Helix 33	AD6	C	269	277	Right-handed alpha
Helix 34	AD7	C	279	284	Right-handed alpha
Helix 35	AD8	D	32	51	Right-handed alpha
Helix 36	AD9	D	75	98	Right-handed alpha
Helix 37	AE1	D	125	129	Right-handed 310
Helix 38	AE2	D	133	149	Right-handed alpha
Helix 39	AE3	D	152	155	Right-handed 310
Helix 40	AE4	D	191	197	Right-handed 310
Helix 41	AE5	D	209	229	Right-handed alpha
Helix 42	AE6	D	250	254	Right-handed 310
Helix 43	AE7	D	269	277	Right-handed alpha
Helix 44	AE8	D	279	284	Right-handed alpha

There are 18 sheets in PDB entry 8DF2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	122	first strand
Strand 2	A	60	67	parallel
Strand 3	A	157	162	parallel
Strand 4	A	179	185	parallel
Strand 5	A	172	176	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	246	first strand
Strand 2	A	266	267	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	295	first strand
Strand 2	A	301	302	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	360	366	first strand
Strand 2	A	318	325	anti-parallel
Strand 3	A	307	315	anti-parallel
Strand 4	B	307	315	anti-parallel
Strand 5	B	318	325	anti-parallel
Strand 6	B	360	366	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	349	354	first strand
Strand 2	A	331	339	anti-parallel
Strand 3	A	373	383	anti-parallel
Strand 4	A	388	397	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	122	first strand
Strand 2	B	60	67	parallel
Strand 3	B	157	162	parallel
Strand 4	B	179	185	parallel
Strand 5	B	172	176	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	246	first strand
Strand 2	B	266	267	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	294	295	first strand
Strand 2	B	301	302	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	354	first strand
Strand 2	B	331	339	anti-parallel
Strand 3	B	374	383	anti-parallel
Strand 4	B	388	396	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	60	67	parallel
Strand 3	C	157	162	parallel
Strand 4	C	179	185	parallel
Strand 5	C	172	176	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	246	first strand
Strand 2	C	266	267	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	295	first strand
Strand 2	C	301	302	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	360	366	first strand
Strand 2	C	318	325	anti-parallel
Strand 3	C	307	315	anti-parallel
Strand 4	D	306	315	anti-parallel
Strand 5	D	318	326	anti-parallel
Strand 6	D	360	366	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	349	354	first strand
Strand 2	C	331	339	anti-parallel
Strand 3	C	374	383	anti-parallel
Strand 4	C	388	396	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	122	first strand
Strand 2	D	60	67	parallel
Strand 3	D	157	162	parallel
Strand 4	D	179	185	parallel
Strand 5	D	172	176	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	246	first strand
Strand 2	D	266	267	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	294	295	first strand
Strand 2	D	301	302	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	349	354	first strand
Strand 2	D	331	339	anti-parallel
Strand 3	D	374	383	anti-parallel
Strand 4	D	388	396	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DF2

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DF2