Analysis of interatomic Contacts of Structural Units in PDB entry:
8DF9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DF9 entry

There are 8 chains in PDB entry 8DF9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2PRO 854
B
 ALA 2GLY 852
S
 G 6 C 38
T
 G 1 C 33
U
 G 2 C 18
V
 T 20 T 39
W
 G 2 A 19
X
 T 20 T 39
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are121 helices in PDB entry 8DF9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 43Right-handed alpha
Helix 2
AA2
A
43 48Right-handed alpha
Helix 3
AA3
A
49 69Right-handed alpha
Helix 4
AA4
A
87 94Right-handed alpha
Helix 5
AA5
A
99 106Right-handed alpha
Helix 6
AA6
A
110 118Right-handed alpha
Helix 7
AA7
A
139 149Right-handed alpha
Helix 8
AA8
A
158 162Right-handed 310
Helix 9
AA9
A
163 167Right-handed 310
Helix 10
AB1
A
169 177Right-handed alpha
Helix 11
AB2
A
182 195Right-handed alpha
Helix 12
AB3
A
199 208Right-handed alpha
Helix 13
AB4
A
210 216Right-handed alpha
Helix 14
AB5
A
224 235Right-handed alpha
Helix 15
AB6
A
239 266Right-handed alpha
Helix 16
AB7
A
274 280Right-handed alpha
Helix 17
AB8
A
281 304Right-handed alpha
Helix 18
AB9
A
308 319Right-handed alpha
Helix 19
AC1
A
322 327Right-handed alpha
Helix 20
AC2
A
330 338Right-handed alpha
Helix 21
AC3
A
342 350Right-handed alpha
Helix 22
AC4
A
350 359Right-handed alpha
Helix 23
AC5
A
363 375Right-handed alpha
Helix 24
AC6
A
376 383Right-handed alpha
Helix 25
AC7
A
384 394Right-handed alpha
Helix 26
AC8
A
398 415Right-handed alpha
Helix 27
AC9
A
420 432Right-handed alpha
Helix 28
AD1
A
433 443Right-handed alpha
Helix 29
AD2
A
445 451Right-handed alpha
Helix 30
AD3
A
456 464Right-handed alpha
Helix 31
AD4
A
466 472Right-handed alpha
Helix 32
AD5
A
477 489Right-handed alpha
Helix 33
AD6
A
490 497Right-handed alpha
Helix 34
AD7
A
498 505Right-handed alpha
Helix 35
AD8
A
508 517Right-handed alpha
Helix 36
AD9
A
518 523Right-handed alpha
Helix 37
AE1
A
527 538Right-handed alpha
Helix 38
AE2
A
540 547Right-handed alpha
Helix 39
AE3
A
548 554Right-handed alpha
Helix 40
AE4
A
558 566Right-handed alpha
Helix 41
AE5
A
569 576Right-handed alpha
Helix 42
AE6
A
577 589Right-handed alpha
Helix 43
AE7
A
590 598Right-handed alpha
Helix 44
AE8
A
599 606Right-handed alpha
Helix 45
AE9
A
609 617Right-handed alpha
Helix 46
AF1
A
692 716Right-handed alpha
Helix 47
AF2
A
718 728Right-handed alpha
Helix 48
AF3
A
730 736Right-handed alpha
Helix 49
AF4
A
741 749Right-handed alpha
Helix 50
AF5
A
751 758Right-handed alpha
Helix 51
AF6
A
761 773Right-handed alpha
Helix 52
AF7
A
774 782Right-handed alpha
Helix 53
AF8
A
783 790Right-handed alpha
Helix 54
AF9
A
793 801Right-handed alpha
Helix 55
AG1
A
803 808Right-handed alpha
Helix 56
AG2
A
812 823Right-handed alpha
Helix 57
AG3
A
825 830Right-handed alpha
Helix 58
AG4
A
833 840Right-handed alpha
Helix 59
AG5
A
843 851Right-handed alpha
Helix 60
AG6
B
12 43Right-handed alpha
Helix 61
AG7
B
49 69Right-handed alpha
Helix 62
AG8
B
87 94Right-handed alpha
Helix 63
AG9
B
99 106Right-handed alpha
Helix 64
AH1
B
110 118Right-handed alpha
Helix 65
AH2
B
139 149Right-handed alpha
Helix 66
AH3
B
158 162Right-handed 310
Helix 67
AH4
B
163 167Right-handed 310
Helix 68
AH5
B
169 177Right-handed alpha
Helix 69
AH6
B
182 195Right-handed alpha
Helix 70
AH7
B
199 208Right-handed alpha
Helix 71
AH8
B
210 216Right-handed alpha
Helix 72
AH9
B
224 235Right-handed alpha
Helix 73
AI1
B
239 266Right-handed alpha
Helix 74
AI2
B
274 280Right-handed alpha
Helix 75
AI3
B
281 304Right-handed alpha
Helix 76
AI4
B
308 319Right-handed alpha
Helix 77
AI5
B
322 327Right-handed alpha
Helix 78
AI6
B
330 338Right-handed alpha
Helix 79
AI7
B
342 350Right-handed alpha
Helix 80
AI8
B
350 359Right-handed alpha
Helix 81
AI9
B
363 375Right-handed alpha
Helix 82
AJ1
B
376 383Right-handed alpha
Helix 83
AJ2
B
384 394Right-handed alpha
Helix 84
AJ3
B
398 415Right-handed alpha
Helix 85
AJ4
B
420 432Right-handed alpha
Helix 86
AJ5
B
433 443Right-handed alpha
Helix 87
AJ6
B
445 451Right-handed alpha
Helix 88
AJ7
B
456 464Right-handed alpha
Helix 89
AJ8
B
466 472Right-handed alpha
Helix 90
AJ9
B
477 489Right-handed alpha
Helix 91
AK1
B
490 496Right-handed alpha
Helix 92
AK2
B
498 505Right-handed alpha
Helix 93
AK3
B
508 517Right-handed alpha
Helix 94
AK4
B
518 523Right-handed alpha
Helix 95
AK5
B
527 538Right-handed alpha
Helix 96
AK6
B
540 547Right-handed alpha
Helix 97
AK7
B
548 554Right-handed alpha
Helix 98
AK8
B
558 566Right-handed alpha
Helix 99
AK9
B
569 576Right-handed alpha
Helix 100
AL1
B
577 589Right-handed alpha
Helix 101
AL2
B
590 598Right-handed alpha
Helix 102
AL3
B
599 606Right-handed alpha
Helix 103
AL4
B
609 617Right-handed alpha
Helix 104
AL5
B
618 629Right-handed alpha
Helix 105
AL6
B
631 642Right-handed alpha
Helix 106
AL7
B
647 651Right-handed 310
Helix 107
AL8
B
653 661Right-handed alpha
Helix 108
AL9
B
665 688Right-handed alpha
Helix 109
AM1
B
692 716Right-handed alpha
Helix 110
AM2
B
718 728Right-handed alpha
Helix 111
AM3
B
730 736Right-handed alpha
Helix 112
AM4
B
741 749Right-handed alpha
Helix 113
AM5
B
751 758Right-handed alpha
Helix 114
AM6
B
761 773Right-handed alpha
Helix 115
AM7
B
774 782Right-handed alpha
Helix 116
AM8
B
783 790Right-handed alpha
Helix 117
AM9
B
793 801Right-handed alpha
Helix 118
AN1
B
803 808Right-handed alpha
Helix 119
AN2
B
812 823Right-handed alpha
Helix 120
AN3
B
836 841Right-handed alpha
Helix 121
AN4
B
844 850Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8DF9. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
77 82anti-parallel
Strand 3
A
85 86anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
77 82anti-parallel
Strand 3
B
85 86anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il