Analysis of interatomic Contacts of Structural Units in PDB entry:
8DFB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DFB entry

There are 4 chains in PDB entry 8DFB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 3GLY 852
B
 LEU 3GLY 852
U
 G 2 A 41
V
 G 2 A 41
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are131 helices in PDB entry 8DFB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 43Right-handed alpha
Helix 2
AA2
A
43 49Right-handed alpha
Helix 3
AA3
A
49 69Right-handed alpha
Helix 4
AA4
A
87 93Right-handed alpha
Helix 5
AA5
A
99 106Right-handed alpha
Helix 6
AA6
A
110 118Right-handed alpha
Helix 7
AA7
A
121 125Right-handed 310
Helix 8
AA8
A
139 149Right-handed alpha
Helix 9
AA9
A
158 162Right-handed 310
Helix 10
AB1
A
163 167Right-handed 310
Helix 11
AB2
A
170 176Right-handed alpha
Helix 12
AB3
A
182 193Right-handed alpha
Helix 13
AB4
A
199 206Right-handed alpha
Helix 14
AB5
A
210 216Right-handed alpha
Helix 15
AB6
A
224 235Right-handed alpha
Helix 16
AB7
A
239 270Right-handed alpha
Helix 17
AB8
A
274 287Right-handed alpha
Helix 18
AB9
A
291 306Right-handed alpha
Helix 19
AC1
A
308 319Right-handed alpha
Helix 20
AC2
A
322 328Right-handed alpha
Helix 21
AC3
A
330 338Right-handed alpha
Helix 22
AC4
A
342 350Right-handed alpha
Helix 23
AC5
A
350 361Right-handed alpha
Helix 24
AC6
A
363 375Right-handed alpha
Helix 25
AC7
A
376 383Right-handed alpha
Helix 26
AC8
A
384 394Right-handed alpha
Helix 27
AC9
A
398 415Right-handed alpha
Helix 28
AD1
A
421 432Right-handed alpha
Helix 29
AD2
A
433 443Right-handed alpha
Helix 30
AD3
A
445 451Right-handed alpha
Helix 31
AD4
A
456 464Right-handed alpha
Helix 32
AD5
A
466 472Right-handed alpha
Helix 33
AD6
A
477 489Right-handed alpha
Helix 34
AD7
A
490 496Right-handed alpha
Helix 35
AD8
A
498 505Right-handed alpha
Helix 36
AD9
A
508 517Right-handed alpha
Helix 37
AE1
A
518 525Right-handed alpha
Helix 38
AE2
A
527 538Right-handed alpha
Helix 39
AE3
A
540 546Right-handed alpha
Helix 40
AE4
A
548 555Right-handed alpha
Helix 41
AE5
A
558 566Right-handed alpha
Helix 42
AE6
A
569 574Right-handed alpha
Helix 43
AE7
A
577 589Right-handed alpha
Helix 44
AE8
A
590 598Right-handed alpha
Helix 45
AE9
A
599 606Right-handed alpha
Helix 46
AF1
A
609 617Right-handed alpha
Helix 47
AF2
A
618 625Right-handed alpha
Helix 48
AF3
A
631 642Right-handed alpha
Helix 49
AF4
A
645 652Right-handed alpha
Helix 50
AF5
A
654 661Right-handed alpha
Helix 51
AF6
A
665 684Right-handed alpha
Helix 52
AF7
A
692 716Right-handed alpha
Helix 53
AF8
A
718 728Right-handed alpha
Helix 54
AF9
A
730 736Right-handed alpha
Helix 55
AG1
A
741 749Right-handed alpha
Helix 56
AG2
A
751 758Right-handed alpha
Helix 57
AG3
A
761 773Right-handed alpha
Helix 58
AG4
A
774 780Right-handed alpha
Helix 59
AG5
A
783 790Right-handed alpha
Helix 60
AG6
A
793 802Right-handed alpha
Helix 61
AG7
A
803 809Right-handed alpha
Helix 62
AG8
A
812 822Right-handed alpha
Helix 63
AG9
A
825 831Right-handed alpha
Helix 64
AH1
A
833 840Right-handed alpha
Helix 65
AH2
A
843 852Right-handed alpha
Helix 66
AH3
B
12 43Right-handed alpha
Helix 67
AH4
B
43 49Right-handed alpha
Helix 68
AH5
B
49 69Right-handed alpha
Helix 69
AH6
B
87 93Right-handed alpha
Helix 70
AH7
B
99 106Right-handed alpha
Helix 71
AH8
B
110 118Right-handed alpha
Helix 72
AH9
B
121 125Right-handed 310
Helix 73
AI1
B
139 149Right-handed alpha
Helix 74
AI2
B
158 162Right-handed 310
Helix 75
AI3
B
163 167Right-handed 310
Helix 76
AI4
B
170 176Right-handed alpha
Helix 77
AI5
B
182 193Right-handed alpha
Helix 78
AI6
B
199 206Right-handed alpha
Helix 79
AI7
B
210 216Right-handed alpha
Helix 80
AI8
B
224 235Right-handed alpha
Helix 81
AI9
B
239 270Right-handed alpha
Helix 82
AJ1
B
274 287Right-handed alpha
Helix 83
AJ2
B
291 306Right-handed alpha
Helix 84
AJ3
B
308 319Right-handed alpha
Helix 85
AJ4
B
322 328Right-handed alpha
Helix 86
AJ5
B
330 338Right-handed alpha
Helix 87
AJ6
B
342 350Right-handed alpha
Helix 88
AJ7
B
350 361Right-handed alpha
Helix 89
AJ8
B
363 375Right-handed alpha
Helix 90
AJ9
B
376 383Right-handed alpha
Helix 91
AK1
B
384 394Right-handed alpha
Helix 92
AK2
B
398 415Right-handed alpha
Helix 93
AK3
B
421 432Right-handed alpha
Helix 94
AK4
B
433 443Right-handed alpha
Helix 95
AK5
B
445 451Right-handed alpha
Helix 96
AK6
B
456 464Right-handed alpha
Helix 97
AK7
B
466 472Right-handed alpha
Helix 98
AK8
B
477 489Right-handed alpha
Helix 99
AK9
B
490 496Right-handed alpha
Helix 100
AL1
B
498 505Right-handed alpha
Helix 101
AL2
B
508 517Right-handed alpha
Helix 102
AL3
B
518 525Right-handed alpha
Helix 103
AL4
B
527 538Right-handed alpha
Helix 104
AL5
B
540 546Right-handed alpha
Helix 105
AL6
B
548 555Right-handed alpha
Helix 106
AL7
B
558 566Right-handed alpha
Helix 107
AL8
B
569 574Right-handed alpha
Helix 108
AL9
B
577 589Right-handed alpha
Helix 109
AM1
B
590 598Right-handed alpha
Helix 110
AM2
B
599 606Right-handed alpha
Helix 111
AM3
B
609 617Right-handed alpha
Helix 112
AM4
B
618 625Right-handed alpha
Helix 113
AM5
B
631 642Right-handed alpha
Helix 114
AM6
B
645 652Right-handed alpha
Helix 115
AM7
B
654 661Right-handed alpha
Helix 116
AM8
B
665 684Right-handed alpha
Helix 117
AM9
B
692 705Right-handed alpha
Helix 118
AN1
B
705 717Right-handed alpha
Helix 119
AN2
B
718 728Right-handed alpha
Helix 120
AN3
B
730 736Right-handed alpha
Helix 121
AN4
B
741 749Right-handed alpha
Helix 122
AN5
B
751 758Right-handed alpha
Helix 123
AN6
B
761 773Right-handed alpha
Helix 124
AN7
B
774 780Right-handed alpha
Helix 125
AN8
B
783 790Right-handed alpha
Helix 126
AN9
B
793 801Right-handed alpha
Helix 127
AO1
B
803 809Right-handed alpha
Helix 128
AO2
B
812 822Right-handed alpha
Helix 129
AO3
B
825 831Right-handed alpha
Helix 130
AO4
B
833 840Right-handed alpha
Helix 131
AO5
B
843 852Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8DFB. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 9first strand
Strand 2
A
77 82anti-parallel
Strand 3
A
85 86anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 9first strand
Strand 2
B
77 82anti-parallel
Strand 3
B
85 86anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il