Analysis of interatomic Contacts of Structural Units in PDB entry:
8DFV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DFV entry

There are 3 chains in PDB entry 8DFV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 2240
E	U 1	U 60
K	ALA 132	LYS 465

There are 65 helices in PDB entry 8DFV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	31	Right-handed alpha
Helix 2	AA2	A	39	59	Right-handed alpha
Helix 3	AA3	A	79	88	Right-handed alpha
Helix 4	AA4	A	107	111	Right-handed 310
Helix 5	AA5	A	117	127	Right-handed alpha
Helix 6	AA6	A	145	157	Right-handed alpha
Helix 7	AA7	A	187	199	Right-handed alpha
Helix 8	AA8	A	207	215	Right-handed alpha
Helix 9	AA9	A	232	252	Right-handed alpha
Helix 10	AB1	A	279	293	Right-handed alpha
Helix 11	AB2	A	294	313	Right-handed alpha
Helix 12	AB3	A	318	344	Right-handed alpha
Helix 13	AB4	A	354	361	Right-handed alpha
Helix 14	AB5	A	362	375	Right-handed alpha
Helix 15	AB6	A	501	517	Right-handed alpha
Helix 16	AB7	A	520	524	Right-handed 310
Helix 17	AB8	A	540	560	Right-handed alpha
Helix 18	AB9	A	569	573	Right-handed 310
Helix 19	AC1	A	592	601	Right-handed alpha
Helix 20	AC2	A	629	639	Right-handed alpha
Helix 21	AC3	A	760	785	Right-handed alpha
Helix 22	AC4	A	791	801	Right-handed alpha
Helix 23	AC5	A	822	834	Right-handed alpha
Helix 24	AC6	A	884	904	Right-handed alpha
Helix 25	AC7	A	922	927	Right-handed 310
Helix 26	AC8	A	931	941	Right-handed alpha
Helix 27	AC9	A	1045	1062	Right-handed alpha
Helix 28	AD1	A	1098	1108	Right-handed alpha
Helix 29	AD2	A	1117	1124	Right-handed alpha
Helix 30	AD3	A	1230	1234	Right-handed 310
Helix 31	AD4	A	1238	1242	Right-handed 310
Helix 32	AD5	A	1248	1282	Right-handed alpha
Helix 33	AD6	A	1524	1546	Right-handed alpha
Helix 34	AD7	A	1568	1581	Right-handed alpha
Helix 35	AD8	A	1607	1616	Right-handed alpha
Helix 36	AD9	A	1620	1629	Right-handed alpha
Helix 37	AE1	A	1636	1650	Right-handed alpha
Helix 38	AE2	A	1722	1731	Right-handed alpha
Helix 39	AE3	A	1732	1736	Right-handed 310
Helix 40	AE4	A	1741	1764	Right-handed alpha
Helix 41	AE5	A	1768	1780	Right-handed alpha
Helix 42	AE6	A	1781	1792	Right-handed alpha
Helix 43	AE7	A	1793	1797	Right-handed 310
Helix 44	AE8	A	1838	1842	Right-handed 310
Helix 45	AE9	A	1847	1852	Right-handed alpha
Helix 46	AF1	A	1900	1931	Right-handed alpha
Helix 47	AF2	A	1981	1990	Right-handed alpha
Helix 48	AF3	A	1993	1999	Right-handed alpha
Helix 49	AF4	A	2007	2015	Right-handed alpha
Helix 50	AF5	A	2028	2049	Right-handed alpha
Helix 51	AF6	A	2055	2067	Right-handed alpha
Helix 52	AF7	A	2068	2079	Right-handed alpha
Helix 53	AF8	A	2089	2106	Right-handed alpha
Helix 54	AF9	A	2131	2149	Right-handed alpha
Helix 55	AG1	A	2155	2173	Right-handed alpha
Helix 56	AG2	A	2178	2187	Right-handed alpha
Helix 57	AG3	A	2223	2239	Right-handed alpha
Helix 58	AG4	K	135	146	Right-handed alpha
Helix 59	AG5	K	188	204	Right-handed alpha
Helix 60	AG6	K	253	262	Right-handed alpha
Helix 61	AG7	K	300	319	Right-handed alpha
Helix 62	AG8	K	359	374	Right-handed alpha
Helix 63	AG9	K	376	384	Right-handed alpha
Helix 64	AH1	K	393	405	Right-handed alpha
Helix 65	AH2	K	443	464	Right-handed alpha

There are 19 sheets in PDB entry 8DFV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	116	first strand
Strand 2	A	64	68	parallel
Strand 3	A	135	138	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	221	first strand
Strand 2	A	609	614	parallel
Strand 3	A	224	225	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	221	first strand
Strand 2	A	609	614	parallel
Strand 3	A	584	586	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	527	529	first strand
Strand 2	A	565	567	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	805	806	first strand
Strand 2	A	1634	1635	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	847	850	first strand
Strand 2	A	863	866	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	853	854	first strand
Strand 2	A	859	860	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	952	956	first strand
Strand 2	A	1895	1899	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1036	1042	first strand
Strand 2	A	974	978	anti-parallel
Strand 3	A	1006	1012	anti-parallel
Strand 4	A	1083	1089	anti-parallel
Strand 5	A	1095	1097	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	981	986	first strand
Strand 2	A	1029	1033	anti-parallel
Strand 3	A	1023	1026	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1072	1073	first strand
Strand 2	A	1814	1815	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1153	1155	first strand
Strand 2	A	1191	1194	anti-parallel
Strand 3	A	1235	1237	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1673	1674	first strand
Strand 2	A	1679	1680	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1937	1940	first strand
Strand 2	A	1962	1965	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2191	2193	first strand
Strand 2	A	2205	2211	anti-parallel
Strand 3	A	2197	2198	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2191	2193	first strand
Strand 2	A	2205	2211	anti-parallel
Strand 3	A	2215	2221	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	152	160	first strand
Strand 2	K	165	173	anti-parallel
Strand 3	K	180	186	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	268	273	first strand
Strand 2	K	283	288	anti-parallel
Strand 3	K	293	298	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	408	412	first strand
Strand 2	K	423	430	anti-parallel
Strand 3	K	437	441	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DFV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DFV