Analysis of interatomic Contacts of Structural Units in PDB entry:
8DFW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DFW entry

There are 4 chains in PDB entry 8DFW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 3	SER 215
B	GLU -2	SER 217
D	ILE 2	GLU 206
G	GLY 2	LYS 231

There are 19 helices in PDB entry 8DFW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	57	60	Right-handed 310
Helix 2	AA2	A	61	65	Right-handed 310
Helix 3	AA3	A	88	92	Right-handed 310
Helix 4	AA4	A	209	213	Right-handed 310
Helix 5	AA5	B	57	60	Right-handed 310
Helix 6	AA6	B	61	65	Right-handed 310
Helix 7	AA7	B	75	78	Right-handed 310
Helix 8	AA8	B	88	92	Right-handed 310
Helix 9	AA9	B	209	213	Right-handed 310
Helix 10	AB1	D	29	33	Right-handed 310
Helix 11	AB2	D	83	87	Right-handed 310
Helix 12	AB3	D	98	102	Right-handed 310
Helix 13	AB4	D	185	189	Right-handed 310
Helix 14	AB5	D	203	206	Right-handed 310
Helix 15	AB6	G	75	77	Right-handed 310
Helix 16	AB7	G	88	92	Right-handed 310
Helix 17	AB8	G	140	148	Right-handed alpha
Helix 18	AB9	G	200	204	Right-handed 310
Helix 19	AC1	G	217	221	Right-handed 310

There are 20 sheets in PDB entry 8DFW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	5	first strand
Strand 2	A	19	25	anti-parallel
Strand 3	A	79	84	anti-parallel
Strand 4	A	68	74	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	14	first strand
Strand 2	A	105	115	parallel
Strand 3	A	93	100	anti-parallel
Strand 4	A	35	39	anti-parallel
Strand 5	A	48	51	anti-parallel
Strand 6	A	54	55	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	129	first strand
Strand 2	A	132	142	anti-parallel
Strand 3	A	173	181	anti-parallel
Strand 4	A	163	167	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	158	first strand
Strand 2	A	147	151	anti-parallel
Strand 3	A	188	195	anti-parallel
Strand 4	A	200	207	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	5	first strand
Strand 2	B	19	26	anti-parallel
Strand 3	B	79	84	anti-parallel
Strand 4	B	68	74	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	14	first strand
Strand 2	B	104	115	parallel
Strand 3	B	93	101	anti-parallel
Strand 4	B	35	39	anti-parallel
Strand 5	B	48	51	anti-parallel
Strand 6	B	54	55	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	129	first strand
Strand 2	B	132	142	anti-parallel
Strand 3	B	173	181	anti-parallel
Strand 4	B	162	167	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	158	first strand
Strand 2	B	147	151	anti-parallel
Strand 3	B	188	195	anti-parallel
Strand 4	B	200	207	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	19	26	anti-parallel
Strand 3	D	74	79	anti-parallel
Strand 4	D	64	69	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	113	118	parallel
Strand 3	D	88	95	anti-parallel
Strand 4	D	35	40	anti-parallel
Strand 5	D	47	51	anti-parallel
Strand 6	D	55	56	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	113	118	parallel
Strand 3	D	88	95	anti-parallel
Strand 4	D	107	109	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	134	first strand
Strand 2	D	137	145	anti-parallel
Strand 3	D	175	183	anti-parallel
Strand 4	D	159	162	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	134	first strand
Strand 2	D	137	145	anti-parallel
Strand 3	D	175	183	anti-parallel
Strand 4	D	166	169	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	150	155	first strand
Strand 2	D	190	195	anti-parallel
Strand 3	D	198	201	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	5	first strand
Strand 2	G	19	26	anti-parallel
Strand 3	G	79	84	anti-parallel
Strand 4	G	69	73	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	14	first strand
Strand 2	G	117	122	parallel
Strand 3	G	93	102	anti-parallel
Strand 4	G	34	40	anti-parallel
Strand 5	G	46	53	anti-parallel
Strand 6	G	58	60	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	14	first strand
Strand 2	G	117	122	parallel
Strand 3	G	93	102	anti-parallel
Strand 4	G	109	113	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	133	137	first strand
Strand 2	G	150	159	anti-parallel
Strand 3	G	190	199	anti-parallel
Strand 4	G	180	181	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	133	137	first strand
Strand 2	G	150	159	anti-parallel
Strand 3	G	190	199	anti-parallel
Strand 4	G	185	187	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	165	170	first strand
Strand 2	G	208	213	anti-parallel
Strand 3	G	223	227	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DFW

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DFW