Analysis of interatomic Contacts of Structural Units in PDB entry:
8DG5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DG5 entry

There are 3 chains in PDB entry 8DG5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 11	LYS 2240
E	G 2	U 60
K	ALA 132	LYS 465

There are 66 helices in PDB entry 8DG5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	31	Right-handed alpha
Helix 2	AA2	A	39	59	Right-handed alpha
Helix 3	AA3	A	79	88	Right-handed alpha
Helix 4	AA4	A	117	127	Right-handed alpha
Helix 5	AA5	A	145	157	Right-handed alpha
Helix 6	AA6	A	187	199	Right-handed alpha
Helix 7	AA7	A	232	251	Right-handed alpha
Helix 8	AA8	A	280	285	Right-handed alpha
Helix 9	AA9	A	286	293	Right-handed alpha
Helix 10	AB1	A	294	311	Right-handed alpha
Helix 11	AB2	A	319	346	Right-handed alpha
Helix 12	AB3	A	354	360	Right-handed alpha
Helix 13	AB4	A	362	374	Right-handed alpha
Helix 14	AB5	A	503	519	Right-handed alpha
Helix 15	AB6	A	520	523	Right-handed 310
Helix 16	AB7	A	540	560	Right-handed alpha
Helix 17	AB8	A	569	573	Right-handed 310
Helix 18	AB9	A	592	601	Right-handed alpha
Helix 19	AC1	A	629	639	Right-handed alpha
Helix 20	AC2	A	760	784	Right-handed alpha
Helix 21	AC3	A	791	802	Right-handed alpha
Helix 22	AC4	A	821	833	Right-handed alpha
Helix 23	AC5	A	884	904	Right-handed alpha
Helix 24	AC6	A	931	941	Right-handed alpha
Helix 25	AC7	A	960	964	Right-handed 310
Helix 26	AC8	A	1047	1062	Right-handed alpha
Helix 27	AC9	A	1098	1108	Right-handed alpha
Helix 28	AD1	A	1117	1124	Right-handed alpha
Helix 29	AD2	A	1171	1179	Right-handed alpha
Helix 30	AD3	A	1220	1230	Right-handed alpha
Helix 31	AD4	A	1248	1282	Right-handed alpha
Helix 32	AD5	A	1526	1533	Right-handed alpha
Helix 33	AD6	A	1535	1548	Right-handed alpha
Helix 34	AD7	A	1567	1581	Right-handed alpha
Helix 35	AD8	A	1607	1616	Right-handed alpha
Helix 36	AD9	A	1624	1629	Right-handed alpha
Helix 37	AE1	A	1635	1650	Right-handed alpha
Helix 38	AE2	A	1722	1731	Right-handed alpha
Helix 39	AE3	A	1732	1736	Right-handed 310
Helix 40	AE4	A	1741	1764	Right-handed alpha
Helix 41	AE5	A	1768	1780	Right-handed alpha
Helix 42	AE6	A	1781	1792	Right-handed alpha
Helix 43	AE7	A	1794	1798	Right-handed 310
Helix 44	AE8	A	1819	1824	Right-handed alpha
Helix 45	AE9	A	1836	1846	Right-handed alpha
Helix 46	AF1	A	1847	1854	Right-handed alpha
Helix 47	AF2	A	1900	1931	Right-handed alpha
Helix 48	AF3	A	1981	1990	Right-handed alpha
Helix 49	AF4	A	1993	2001	Right-handed alpha
Helix 50	AF5	A	2006	2015	Right-handed alpha
Helix 51	AF6	A	2028	2049	Right-handed alpha
Helix 52	AF7	A	2055	2065	Right-handed alpha
Helix 53	AF8	A	2068	2079	Right-handed alpha
Helix 54	AF9	A	2089	2107	Right-handed alpha
Helix 55	AG1	A	2131	2149	Right-handed alpha
Helix 56	AG2	A	2153	2174	Right-handed alpha
Helix 57	AG3	A	2178	2187	Right-handed alpha
Helix 58	AG4	A	2223	2240	Right-handed alpha
Helix 59	AG5	K	135	145	Right-handed alpha
Helix 60	AG6	K	188	205	Right-handed alpha
Helix 61	AG7	K	252	262	Right-handed alpha
Helix 62	AG8	K	300	319	Right-handed alpha
Helix 63	AG9	K	359	374	Right-handed alpha
Helix 64	AH1	K	376	385	Right-handed alpha
Helix 65	AH2	K	393	405	Right-handed alpha
Helix 66	AH3	K	443	464	Right-handed alpha

There are 15 sheets in PDB entry 8DG5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	66	first strand
Strand 2	A	135	138	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	583	586	first strand
Strand 2	A	609	614	parallel
Strand 3	A	220	225	parallel
Strand 4	A	1584	1585	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	852	855	first strand
Strand 2	A	858	861	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	952	956	first strand
Strand 2	A	1895	1899	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1023	1026	first strand
Strand 2	A	1029	1037	anti-parallel
Strand 3	A	973	986	anti-parallel
Strand 4	A	1042	1043	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1023	1026	first strand
Strand 2	A	1029	1037	anti-parallel
Strand 3	A	973	986	anti-parallel
Strand 4	A	1006	1012	anti-parallel
Strand 5	A	1083	1089	anti-parallel
Strand 6	A	1095	1097	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1072	1073	first strand
Strand 2	A	1814	1815	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1136	1138	first strand
Strand 2	A	1242	1244	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1153	1155	first strand
Strand 2	A	1191	1193	anti-parallel
Strand 3	A	1236	1237	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1937	1941	first strand
Strand 2	A	1961	1965	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2125	2126	first strand
Strand 2	A	2219	2221	parallel
Strand 3	A	2205	2206	anti-parallel
Strand 4	A	2197	2198	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2192	2193	first strand
Strand 2	A	2209	2211	anti-parallel
Strand 3	A	2215	2216	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	152	159	first strand
Strand 2	K	166	172	anti-parallel
Strand 3	K	181	186	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	268	273	first strand
Strand 2	K	283	288	anti-parallel
Strand 3	K	293	298	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	409	413	first strand
Strand 2	K	423	429	anti-parallel
Strand 3	K	435	441	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DG5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DG5