Analysis of interatomic Contacts of Structural Units in PDB entry:
8DG7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DG7 entry

There are 4 chains in PDB entry 8DG7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 11	LYS 2240
E	G 2	A 22
F	C 35	U 60
K	ALA 132	LYS 465

There are 64 helices in PDB entry 8DG7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	31	Right-handed alpha
Helix 2	AA2	A	39	59	Right-handed alpha
Helix 3	AA3	A	79	88	Right-handed alpha
Helix 4	AA4	A	107	111	Right-handed 310
Helix 5	AA5	A	117	127	Right-handed alpha
Helix 6	AA6	A	145	158	Right-handed alpha
Helix 7	AA7	A	187	200	Right-handed alpha
Helix 8	AA8	A	232	251	Right-handed alpha
Helix 9	AA9	A	279	293	Right-handed alpha
Helix 10	AB1	A	294	313	Right-handed alpha
Helix 11	AB2	A	318	346	Right-handed alpha
Helix 12	AB3	A	354	360	Right-handed alpha
Helix 13	AB4	A	362	375	Right-handed alpha
Helix 14	AB5	A	501	519	Right-handed alpha
Helix 15	AB6	A	540	560	Right-handed alpha
Helix 16	AB7	A	569	573	Right-handed 310
Helix 17	AB8	A	593	598	Right-handed alpha
Helix 18	AB9	A	629	639	Right-handed alpha
Helix 19	AC1	A	760	784	Right-handed alpha
Helix 20	AC2	A	791	802	Right-handed alpha
Helix 21	AC3	A	821	827	Right-handed alpha
Helix 22	AC4	A	885	904	Right-handed alpha
Helix 23	AC5	A	931	941	Right-handed alpha
Helix 24	AC6	A	1046	1062	Right-handed alpha
Helix 25	AC7	A	1098	1108	Right-handed alpha
Helix 26	AC8	A	1117	1124	Right-handed alpha
Helix 27	AC9	A	1171	1179	Right-handed alpha
Helix 28	AD1	A	1220	1230	Right-handed alpha
Helix 29	AD2	A	1238	1240	Right-handed 310
Helix 30	AD3	A	1248	1257	Right-handed alpha
Helix 31	AD4	A	1257	1282	Right-handed alpha
Helix 32	AD5	A	1526	1548	Right-handed alpha
Helix 33	AD6	A	1567	1581	Right-handed alpha
Helix 34	AD7	A	1607	1616	Right-handed alpha
Helix 35	AD8	A	1624	1629	Right-handed alpha
Helix 36	AD9	A	1635	1650	Right-handed alpha
Helix 37	AE1	A	1722	1731	Right-handed alpha
Helix 38	AE2	A	1732	1736	Right-handed 310
Helix 39	AE3	A	1741	1764	Right-handed alpha
Helix 40	AE4	A	1768	1781	Right-handed alpha
Helix 41	AE5	A	1781	1792	Right-handed alpha
Helix 42	AE6	A	1819	1824	Right-handed alpha
Helix 43	AE7	A	1836	1844	Right-handed alpha
Helix 44	AE8	A	1847	1854	Right-handed alpha
Helix 45	AE9	A	1900	1931	Right-handed alpha
Helix 46	AF1	A	1981	1990	Right-handed alpha
Helix 47	AF2	A	1993	1999	Right-handed alpha
Helix 48	AF3	A	2007	2015	Right-handed alpha
Helix 49	AF4	A	2028	2049	Right-handed alpha
Helix 50	AF5	A	2056	2065	Right-handed alpha
Helix 51	AF6	A	2068	2079	Right-handed alpha
Helix 52	AF7	A	2081	2085	Right-handed 310
Helix 53	AF8	A	2089	2106	Right-handed alpha
Helix 54	AF9	A	2131	2149	Right-handed alpha
Helix 55	AG1	A	2152	2174	Right-handed alpha
Helix 56	AG2	A	2178	2186	Right-handed alpha
Helix 57	AG3	A	2223	2239	Right-handed alpha
Helix 58	AG4	K	135	145	Right-handed alpha
Helix 59	AG5	K	146	148	Right-handed 310
Helix 60	AG6	K	188	205	Right-handed alpha
Helix 61	AG7	K	359	373	Right-handed alpha
Helix 62	AG8	K	376	385	Right-handed alpha
Helix 63	AG9	K	393	405	Right-handed alpha
Helix 64	AH1	K	443	462	Right-handed alpha

There are 16 sheets in PDB entry 8DG7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	66	first strand
Strand 2	A	135	138	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	583	586	first strand
Strand 2	A	609	614	parallel
Strand 3	A	220	225	parallel
Strand 4	A	1584	1585	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	527	529	first strand
Strand 2	A	565	567	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	849	855	first strand
Strand 2	A	858	864	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	952	956	first strand
Strand 2	A	1895	1899	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1022	1026	first strand
Strand 2	A	1029	1037	anti-parallel
Strand 3	A	973	986	anti-parallel
Strand 4	A	1042	1043	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1022	1026	first strand
Strand 2	A	1029	1037	anti-parallel
Strand 3	A	973	986	anti-parallel
Strand 4	A	1006	1012	anti-parallel
Strand 5	A	1083	1089	anti-parallel
Strand 6	A	1095	1097	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1072	1073	first strand
Strand 2	A	1814	1815	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1136	1138	first strand
Strand 2	A	1242	1244	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1153	1155	first strand
Strand 2	A	1191	1194	anti-parallel
Strand 3	A	1235	1237	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1937	1941	first strand
Strand 2	A	1961	1965	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2197	2198	first strand
Strand 2	A	2205	2206	anti-parallel
Strand 3	A	2220	2221	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2209	2211	first strand
Strand 2	A	2215	2217	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	152	155	first strand
Strand 2	K	165	172	anti-parallel
Strand 3	K	159	160	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	152	155	first strand
Strand 2	K	165	172	anti-parallel
Strand 3	K	181	186	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	409	414	first strand
Strand 2	K	423	429	anti-parallel
Strand 3	K	435	441	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DG7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DG7