Analysis of interatomic Contacts of Structural Units in PDB entry:
8DG8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DG8 entry

There are 5 chains in PDB entry 8DG8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ILE 20	GLU 472
H	GLN 3	SER 112
L	GLU 3	VAL 106
A	ILE 20	GLU 472
C	ILE 20	GLU 472

There are 40 helices in PDB entry 8DG8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	25	28	Right-handed 310
Helix 2	AA2	B	64	84	Right-handed alpha
Helix 3	AA3	B	124	152	Right-handed alpha
Helix 4	AA4	B	175	190	Right-handed alpha
Helix 5	AA5	B	195	210	Right-handed alpha
Helix 6	AA6	B	228	236	Right-handed alpha
Helix 7	AA7	B	238	243	Right-handed alpha
Helix 8	AA8	B	245	249	Right-handed 310
Helix 9	AA9	B	252	261	Right-handed alpha
Helix 10	AB1	B	349	355	Right-handed alpha
Helix 11	AB2	B	356	358	Right-handed 310
Helix 12	AB3	B	452	471	Right-handed alpha
Helix 13	AB4	H	61	64	Right-handed 310
Helix 14	AB5	H	100	100	Right-handed 310
Helix 15	AB6	A	25	28	Right-handed 310
Helix 16	AB7	A	60	65	Right-handed alpha
Helix 17	AB8	A	66	74	Right-handed alpha
Helix 18	AB9	A	75	83	Right-handed alpha
Helix 19	AC1	A	124	152	Right-handed alpha
Helix 20	AC2	A	175	183	Right-handed alpha
Helix 21	AC3	A	184	189	Right-handed alpha
Helix 22	AC4	A	195	215	Right-handed alpha
Helix 23	AC5	A	228	234	Right-handed alpha
Helix 24	AC6	A	245	250	Right-handed alpha
Helix 25	AC7	A	252	259	Right-handed alpha
Helix 26	AC8	A	349	356	Right-handed alpha
Helix 27	AC9	A	452	469	Right-handed alpha
Helix 28	AD1	C	64	71	Right-handed alpha
Helix 29	AD2	C	72	78	Right-handed alpha
Helix 30	AD3	C	79	87	Right-handed alpha
Helix 31	AD4	C	124	136	Right-handed alpha
Helix 32	AD5	C	136	151	Right-handed alpha
Helix 33	AD6	C	175	190	Right-handed alpha
Helix 34	AD7	C	195	214	Right-handed alpha
Helix 35	AD8	C	228	234	Right-handed alpha
Helix 36	AD9	C	238	243	Right-handed alpha
Helix 37	AE1	C	252	260	Right-handed alpha
Helix 38	AE2	C	349	358	Right-handed alpha
Helix 39	AE3	C	452	469	Right-handed alpha
Helix 40	AE4	C	470	472	Right-handed 310

There are 24 sheets in PDB entry 8DG8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	292	298	anti-parallel
Strand 3	B	315	318	anti-parallel
Strand 4	B	325	326	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	286	first strand
Strand 2	B	37	46	anti-parallel
Strand 3	B	337	340	parallel
Strand 4	B	332	333	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	159	first strand
Strand 2	B	170	172	anti-parallel
Strand 3	B	49	52	parallel
Strand 4	B	275	279	anti-parallel
Strand 5	B	263	270	anti-parallel
Strand 6	B	226	227	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	303	first strand
Strand 2	B	306	309	anti-parallel
Strand 3	B	366	367	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	377	first strand
Strand 2	B	383	385	anti-parallel
Strand 3	B	410	412	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	5	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	68	72	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	89	95	anti-parallel
Strand 5	H	100	103	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	89	95	anti-parallel
Strand 5	H	107	108	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	12	first strand
Strand 2	L	103	105	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	24	first strand
Strand 2	L	70	76	anti-parallel
Strand 3	L	65	66	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	45	50	first strand
Strand 2	L	33	37	anti-parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	96	98	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	283	298	anti-parallel
Strand 3	A	315	318	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	283	298	anti-parallel
Strand 3	A	36	44	anti-parallel
Strand 4	A	337	340	parallel
Strand 5	A	332	333	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	164	first strand
Strand 2	A	167	173	anti-parallel
Strand 3	A	47	52	parallel
Strand 4	A	275	280	anti-parallel
Strand 5	A	263	270	anti-parallel
Strand 6	A	226	227	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	309	first strand
Strand 2	A	366	367	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	377	first strand
Strand 2	A	384	385	anti-parallel
Strand 3	A	410	411	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	420	first strand
Strand 2	A	427	428	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	285	286	first strand
Strand 2	C	31	41	anti-parallel
Strand 3	C	291	297	anti-parallel
Strand 4	C	315	319	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	285	286	first strand
Strand 2	C	31	41	anti-parallel
Strand 3	C	337	340	parallel
Strand 4	C	332	333	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	161	first strand
Strand 2	C	169	172	anti-parallel
Strand 3	C	45	52	parallel
Strand 4	C	275	282	anti-parallel
Strand 5	C	268	269	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	227	first strand
Strand 2	C	263	264	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	303	first strand
Strand 2	C	306	309	anti-parallel
Strand 3	C	364	367	anti-parallel
Strand 4	C	447	449	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	377	first strand
Strand 2	C	383	385	anti-parallel
Strand 3	C	410	412	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	392	394	first strand
Strand 2	C	420	422	anti-parallel
Strand 3	C	426	427	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DG8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DG8