Analysis of interatomic Contacts of Structural Units in PDB entry:
8DGA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DGA entry

There are 4 chains in PDB entry 8DGA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 9	LYS 2240
E	G 2	G 20
F	C 39	U 60
K	ALA 132	LYS 465

There are 64 helices in PDB entry 8DGA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	31	Right-handed alpha
Helix 2	AA2	A	39	61	Right-handed alpha
Helix 3	AA3	A	79	88	Right-handed alpha
Helix 4	AA4	A	107	111	Right-handed 310
Helix 5	AA5	A	117	127	Right-handed alpha
Helix 6	AA6	A	145	159	Right-handed alpha
Helix 7	AA7	A	184	200	Right-handed alpha
Helix 8	AA8	A	207	214	Right-handed alpha
Helix 9	AA9	A	232	252	Right-handed alpha
Helix 10	AB1	A	279	293	Right-handed alpha
Helix 11	AB2	A	294	313	Right-handed alpha
Helix 12	AB3	A	318	344	Right-handed alpha
Helix 13	AB4	A	354	361	Right-handed alpha
Helix 14	AB5	A	365	374	Right-handed alpha
Helix 15	AB6	A	501	519	Right-handed alpha
Helix 16	AB7	A	541	560	Right-handed alpha
Helix 17	AB8	A	592	601	Right-handed alpha
Helix 18	AB9	A	763	785	Right-handed alpha
Helix 19	AC1	A	791	802	Right-handed alpha
Helix 20	AC2	A	821	823	Right-handed 310
Helix 21	AC3	A	824	835	Right-handed alpha
Helix 22	AC4	A	884	903	Right-handed alpha
Helix 23	AC5	A	922	928	Right-handed alpha
Helix 24	AC6	A	931	940	Right-handed alpha
Helix 25	AC7	A	960	964	Right-handed 310
Helix 26	AC8	A	1000	1004	Right-handed 310
Helix 27	AC9	A	1045	1062	Right-handed alpha
Helix 28	AD1	A	1098	1108	Right-handed alpha
Helix 29	AD2	A	1117	1124	Right-handed alpha
Helix 30	AD3	A	1127	1132	Right-handed alpha
Helix 31	AD4	A	1171	1180	Right-handed alpha
Helix 32	AD5	A	1220	1230	Right-handed alpha
Helix 33	AD6	A	1238	1242	Right-handed 310
Helix 34	AD7	A	1248	1282	Right-handed alpha
Helix 35	AD8	A	1538	1550	Right-handed alpha
Helix 36	AD9	A	1565	1581	Right-handed alpha
Helix 37	AE1	A	1607	1616	Right-handed alpha
Helix 38	AE2	A	1622	1629	Right-handed alpha
Helix 39	AE3	A	1635	1650	Right-handed alpha
Helix 40	AE4	A	1722	1731	Right-handed alpha
Helix 41	AE5	A	1741	1764	Right-handed alpha
Helix 42	AE6	A	1768	1780	Right-handed alpha
Helix 43	AE7	A	1781	1793	Right-handed alpha
Helix 44	AE8	A	1794	1798	Right-handed 310
Helix 45	AE9	A	1819	1825	Right-handed alpha
Helix 46	AF1	A	1846	1856	Right-handed alpha
Helix 47	AF2	A	1900	1931	Right-handed alpha
Helix 48	AF3	A	1981	1990	Right-handed alpha
Helix 49	AF4	A	1993	2001	Right-handed alpha
Helix 50	AF5	A	2006	2014	Right-handed alpha
Helix 51	AF6	A	2028	2049	Right-handed alpha
Helix 52	AF7	A	2055	2067	Right-handed alpha
Helix 53	AF8	A	2068	2079	Right-handed alpha
Helix 54	AF9	A	2089	2105	Right-handed alpha
Helix 55	AG1	A	2131	2149	Right-handed alpha
Helix 56	AG2	A	2152	2174	Right-handed alpha
Helix 57	AG3	A	2178	2187	Right-handed alpha
Helix 58	AG4	A	2223	2239	Right-handed alpha
Helix 59	AG5	K	135	146	Right-handed alpha
Helix 60	AG6	K	188	205	Right-handed alpha
Helix 61	AG7	K	359	374	Right-handed alpha
Helix 62	AG8	K	377	384	Right-handed alpha
Helix 63	AG9	K	393	405	Right-handed alpha
Helix 64	AH1	K	443	462	Right-handed alpha

There are 12 sheets in PDB entry 8DGA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	95	first strand
Strand 2	A	113	116	parallel
Strand 3	A	64	68	parallel
Strand 4	A	135	141	parallel
Strand 5	A	170	175	parallel
Strand 6	A	33	36	parallel
Strand 7	A	202	204	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	224	first strand
Strand 2	A	608	613	parallel
Strand 3	A	583	586	parallel
Strand 4	A	496	498	parallel
Strand 5	A	567	568	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	877	878	first strand
Strand 2	A	858	866	anti-parallel
Strand 3	A	847	855	anti-parallel
Strand 4	A	1656	1658	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	952	956	first strand
Strand 2	A	1895	1899	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1022	1026	first strand
Strand 2	A	1029	1037	anti-parallel
Strand 3	A	973	986	anti-parallel
Strand 4	A	1042	1043	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1022	1026	first strand
Strand 2	A	1029	1037	anti-parallel
Strand 3	A	973	986	anti-parallel
Strand 4	A	1006	1012	anti-parallel
Strand 5	A	1083	1089	anti-parallel
Strand 6	A	1095	1097	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1153	1155	first strand
Strand 2	A	1191	1193	anti-parallel
Strand 3	A	1236	1237	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1937	1941	first strand
Strand 2	A	1961	1965	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2192	2193	first strand
Strand 2	A	2209	2211	anti-parallel
Strand 3	A	2215	2217	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2205	2206	first strand
Strand 2	A	2220	2221	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	152	158	first strand
Strand 2	K	167	173	anti-parallel
Strand 3	K	180	186	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	409	412	first strand
Strand 2	K	423	429	anti-parallel
Strand 3	K	437	441	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DGA

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DGA