Analysis of interatomic Contacts of Structural Units in PDB entry:
8DGE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DGE entry

There are 2 chains in PDB entry 8DGE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 46	GLU 758
B	VAL 45	TYR 587

There are 97 helices in PDB entry 8DGE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	102	104	Right-handed 310
Helix 2	AA2	A	122	128	Right-handed alpha
Helix 3	AA3	A	160	164	Right-handed 310
Helix 4	AA4	A	222	226	Right-handed 310
Helix 5	AA5	A	321	326	Right-handed alpha
Helix 6	AA6	A	330	336	Right-handed alpha
Helix 7	AA7	A	337	345	Right-handed alpha
Helix 8	AA8	A	379	393	Right-handed alpha
Helix 9	AA9	A	410	416	Right-handed alpha
Helix 10	AB1	A	451	470	Right-handed alpha
Helix 11	AB2	A	478	482	Right-handed 310
Helix 12	AB3	A	490	495	Right-handed alpha
Helix 13	AB4	A	497	515	Right-handed alpha
Helix 14	AB5	A	526	535	Right-handed alpha
Helix 15	AB6	A	544	553	Right-handed alpha
Helix 16	AB7	A	561	565	Right-handed 310
Helix 17	AB8	A	569	571	Right-handed 310
Helix 18	AB9	A	584	593	Right-handed alpha
Helix 19	AC1	A	594	599	Right-handed 310
Helix 20	AC2	A	600	614	Right-handed alpha
Helix 21	AC3	A	627	631	Right-handed 310
Helix 22	AC4	A	650	655	Right-handed alpha
Helix 23	AC5	A	655	672	Right-handed alpha
Helix 24	AC6	A	673	676	Right-handed 310
Helix 25	AC7	B	102	104	Right-handed 310
Helix 26	AC8	B	122	128	Right-handed alpha
Helix 27	AC9	B	160	164	Right-handed 310
Helix 28	AD1	B	222	226	Right-handed 310
Helix 29	AD2	B	321	326	Right-handed alpha
Helix 30	AD3	B	330	336	Right-handed alpha
Helix 31	AD4	B	337	345	Right-handed alpha
Helix 32	AD5	B	379	393	Right-handed alpha
Helix 33	AD6	B	410	416	Right-handed alpha
Helix 34	AD7	B	451	470	Right-handed alpha
Helix 35	AD8	B	478	482	Right-handed 310
Helix 36	AD9	B	490	495	Right-handed alpha
Helix 37	AE1	B	497	515	Right-handed alpha
Helix 38	AE2	B	526	535	Right-handed alpha
Helix 39	AE3	B	544	554	Right-handed alpha
Helix 40	AE4	B	561	565	Right-handed 310
Helix 41	AE5	B	569	571	Right-handed 310
Helix 42	AE6	B	584	593	Right-handed alpha
Helix 43	AE7	B	594	599	Right-handed 310
Helix 44	AE8	B	600	613	Right-handed alpha
Helix 45	AE9	B	627	631	Right-handed 310
Helix 46	AF1	B	650	655	Right-handed alpha
Helix 47	AF2	B	655	672	Right-handed alpha
Helix 48	AF3	B	673	677	Right-handed 310
Helix 49	AF4	C	102	104	Right-handed 310
Helix 50	AF5	C	122	127	Right-handed alpha
Helix 51	AF6	C	160	164	Right-handed 310
Helix 52	AF7	C	216	218	Right-handed 310
Helix 53	AF8	C	222	226	Right-handed 310
Helix 54	AF9	C	321	326	Right-handed alpha
Helix 55	AG1	C	330	336	Right-handed alpha
Helix 56	AG2	C	337	345	Right-handed alpha
Helix 57	AG3	C	379	393	Right-handed alpha
Helix 58	AG4	C	410	416	Right-handed alpha
Helix 59	AG5	C	451	470	Right-handed alpha
Helix 60	AG6	C	478	482	Right-handed 310
Helix 61	AG7	C	490	495	Right-handed alpha
Helix 62	AG8	C	497	515	Right-handed alpha
Helix 63	AG9	C	526	535	Right-handed alpha
Helix 64	AH1	C	544	554	Right-handed alpha
Helix 65	AH2	C	561	565	Right-handed 310
Helix 66	AH3	C	569	571	Right-handed 310
Helix 67	AH4	C	584	593	Right-handed alpha
Helix 68	AH5	C	594	599	Right-handed 310
Helix 69	AH6	C	600	614	Right-handed alpha
Helix 70	AH7	C	627	631	Right-handed 310
Helix 71	AH8	C	650	655	Right-handed alpha
Helix 72	AH9	C	655	672	Right-handed alpha
Helix 73	AI1	C	673	676	Right-handed 310
Helix 74	AI2	D	102	104	Right-handed 310
Helix 75	AI3	D	122	128	Right-handed alpha
Helix 76	AI4	D	160	164	Right-handed 310
Helix 77	AI5	D	216	218	Right-handed 310
Helix 78	AI6	D	222	226	Right-handed 310
Helix 79	AI7	D	321	326	Right-handed alpha
Helix 80	AI8	D	330	336	Right-handed alpha
Helix 81	AI9	D	337	345	Right-handed alpha
Helix 82	AJ1	D	379	393	Right-handed alpha
Helix 83	AJ2	D	410	416	Right-handed alpha
Helix 84	AJ3	D	451	470	Right-handed alpha
Helix 85	AJ4	D	478	482	Right-handed 310
Helix 86	AJ5	D	490	495	Right-handed alpha
Helix 87	AJ6	D	497	515	Right-handed alpha
Helix 88	AJ7	D	526	537	Right-handed alpha
Helix 89	AJ8	D	544	554	Right-handed alpha
Helix 90	AJ9	D	561	565	Right-handed 310
Helix 91	AK1	D	569	571	Right-handed 310
Helix 92	AK2	D	584	593	Right-handed alpha
Helix 93	AK3	D	594	599	Right-handed 310
Helix 94	AK4	D	600	614	Right-handed alpha
Helix 95	AK5	D	627	631	Right-handed 310
Helix 96	AK6	D	650	655	Right-handed alpha
Helix 97	AK7	D	655	672	Right-handed alpha

There are 35 sheets in PDB entry 8DGE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	53	first strand
Strand 2	A	63	68	anti-parallel
Strand 3	A	114	119	anti-parallel
Strand 4	A	106	111	anti-parallel
Strand 5	A	82	88	anti-parallel
Strand 6	A	137	143	anti-parallel
Strand 7	A	154	157	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	189	first strand
Strand 2	A	192	198	anti-parallel
Strand 3	A	235	240	anti-parallel
Strand 4	A	228	230	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	214	first strand
Strand 2	A	247	256	anti-parallel
Strand 3	A	260	264	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	209	214	first strand
Strand 2	A	247	256	anti-parallel
Strand 3	A	289	294	anti-parallel
Strand 4	A	271	274	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	320	first strand
Strand 2	A	348	351	parallel
Strand 3	A	396	401	parallel
Strand 4	A	473	476	parallel
Strand 5	A	519	522	parallel
Strand 6	A	539	543	parallel
Strand 7	A	573	576	parallel
Strand 8	A	622	625	parallel
Strand 9	A	316	320	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	417	418	first strand
Strand 2	A	423	424	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	681	685	first strand
Strand 2	A	695	700	anti-parallel
Strand 3	A	706	711	anti-parallel
Strand 4	A	750	754	anti-parallel
Strand 5	A	726	729	anti-parallel
Strand 6	A	737	738	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	718	721	first strand
Strand 2	A	742	745	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	53	first strand
Strand 2	B	63	68	anti-parallel
Strand 3	B	114	119	anti-parallel
Strand 4	B	106	111	anti-parallel
Strand 5	B	82	88	anti-parallel
Strand 6	B	137	143	anti-parallel
Strand 7	B	155	157	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	184	187	first strand
Strand 2	B	193	198	anti-parallel
Strand 3	B	235	240	anti-parallel
Strand 4	B	228	230	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	214	first strand
Strand 2	B	248	256	anti-parallel
Strand 3	B	260	264	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	214	first strand
Strand 2	B	248	256	anti-parallel
Strand 3	B	289	293	anti-parallel
Strand 4	B	272	274	anti-parallel

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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	320	first strand
Strand 2	B	348	351	parallel
Strand 3	B	396	401	parallel
Strand 4	B	473	476	parallel
Strand 5	B	519	522	parallel
Strand 6	B	539	543	parallel
Strand 7	B	573	576	parallel
Strand 8	B	622	625	parallel
Strand 9	B	316	320	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	417	418	first strand
Strand 2	B	423	424	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	681	685	first strand
Strand 2	B	695	700	anti-parallel
Strand 3	B	706	711	anti-parallel
Strand 4	B	750	754	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	718	721	first strand
Strand 2	B	742	745	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	726	728	first strand
Strand 2	B	736	738	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	53	first strand
Strand 2	C	63	68	anti-parallel
Strand 3	C	114	119	anti-parallel
Strand 4	C	106	111	anti-parallel
Strand 5	C	82	88	anti-parallel
Strand 6	C	137	143	anti-parallel
Strand 7	C	155	157	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	184	189	first strand
Strand 2	C	192	198	anti-parallel
Strand 3	C	235	240	anti-parallel
Strand 4	C	228	230	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	214	first strand
Strand 2	C	248	256	anti-parallel
Strand 3	C	260	264	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	209	214	first strand
Strand 2	C	248	256	anti-parallel
Strand 3	C	289	293	anti-parallel
Strand 4	C	272	274	anti-parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	316	320	first strand
Strand 2	C	348	351	parallel
Strand 3	C	396	401	parallel
Strand 4	C	473	476	parallel
Strand 5	C	519	522	parallel
Strand 6	C	539	543	parallel
Strand 7	C	573	576	parallel
Strand 8	C	622	625	parallel
Strand 9	C	316	320	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	417	418	first strand
Strand 2	C	423	424	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	685	first strand
Strand 2	C	695	700	anti-parallel
Strand 3	C	706	711	anti-parallel
Strand 4	C	750	754	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	718	721	first strand
Strand 2	C	742	745	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	726	729	first strand
Strand 2	C	735	738	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	53	first strand
Strand 2	D	63	68	anti-parallel
Strand 3	D	114	119	anti-parallel
Strand 4	D	106	111	anti-parallel
Strand 5	D	82	88	anti-parallel
Strand 6	D	137	143	anti-parallel
Strand 7	D	155	157	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	184	189	first strand
Strand 2	D	192	198	anti-parallel
Strand 3	D	235	240	anti-parallel
Strand 4	D	228	230	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	214	first strand
Strand 2	D	248	256	anti-parallel
Strand 3	D	260	264	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	214	first strand
Strand 2	D	248	256	anti-parallel
Strand 3	D	289	293	anti-parallel
Strand 4	D	272	274	anti-parallel

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There are 9 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	320	first strand
Strand 2	D	348	351	parallel
Strand 3	D	396	401	parallel
Strand 4	D	473	476	parallel
Strand 5	D	519	522	parallel
Strand 6	D	539	543	parallel
Strand 7	D	573	576	parallel
Strand 8	D	622	625	parallel
Strand 9	D	316	320	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	417	418	first strand
Strand 2	D	423	424	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	681	685	first strand
Strand 2	D	695	700	anti-parallel
Strand 3	D	706	711	anti-parallel
Strand 4	D	750	754	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	718	721	first strand
Strand 2	D	742	745	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	726	729	first strand
Strand 2	D	735	738	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DGE

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DGE