Analysis of interatomic Contacts of Structural Units in PDB entry:
8DGG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8DGG entry

There are 2 chains in PDB entry 8DGG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 29	VAL 418
B	LEU 29	ALA 343

There are 5 helices in PDB entry 8DGG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	318	322	Right-handed 310
Helix 2	AA2	B	54	59	Right-handed 310
Helix 3	AA3	B	122	126	Right-handed 310
Helix 4	AA4	B	136	140	Right-handed 310
Helix 5	AA5	B	226	230	Right-handed 310

There are 15 sheets in PDB entry 8DGG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	35	first strand
Strand 2	A	153	163	parallel
Strand 3	A	141	148	anti-parallel
Strand 4	A	60	65	anti-parallel
Strand 5	A	96	100	anti-parallel
Strand 6	A	106	107	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	42	first strand
Strand 2	A	130	132	anti-parallel
Strand 3	A	116	118	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	165	170	first strand
Strand 2	A	181	187	anti-parallel
Strand 3	A	219	222	anti-parallel
Strand 4	A	214	215	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	207	first strand
Strand 2	A	197	200	anti-parallel
Strand 3	A	232	236	anti-parallel
Strand 4	A	246	250	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	267	first strand
Strand 2	A	341	349	parallel
Strand 3	A	360	366	anti-parallel
Strand 4	A	390	392	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	273	274	first strand
Strand 2	A	312	313	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	291	first strand
Strand 2	A	302	303	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	330	first strand
Strand 2	A	335	338	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	387	first strand
Strand 2	A	373	378	anti-parallel
Strand 3	A	403	409	anti-parallel
Strand 4	A	412	417	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	35	first strand
Strand 2	B	156	163	parallel
Strand 3	B	141	147	anti-parallel
Strand 4	B	61	65	anti-parallel
Strand 5	B	96	101	anti-parallel
Strand 6	B	105	107	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	42	first strand
Strand 2	B	130	132	anti-parallel
Strand 3	B	116	118	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	167	first strand
Strand 2	B	181	186	anti-parallel
Strand 3	B	219	222	anti-parallel
Strand 4	B	214	216	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	206	first strand
Strand 2	B	197	200	anti-parallel
Strand 3	B	232	236	anti-parallel
Strand 4	B	246	250	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	274	first strand
Strand 2	B	312	314	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	330	first strand
Strand 2	B	335	336	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8DGG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8DGG