Analysis of interatomic Contacts of Structural Units in PDB entry:
8DGH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DGH entry

There are 2 chains in PDB entry 8DGH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 82LYS 149
B
 LYS 1128LEU 1139
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 8DGH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
83 94Right-handed alpha
Helix 2
AA2
A
102 113Right-handed alpha
Helix 3
AA3
A
118 130Right-handed alpha
Helix 4
AA4
A
139 147Right-handed alpha
Helix 5
AA5
B
1129 1139Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 8DGH.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
100 101first strand
Strand 2
A
137 138anti-parallel
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