Analysis of interatomic Contacts of Structural Units in PDB entry:
8DGI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DGI entry

There are 2 chains in PDB entry 8DGI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 13LYS 2240
N
 THR 358LYS 465
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 8DGI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 31Right-handed alpha
Helix 2
AA2
A
39 61Right-handed alpha
Helix 3
AA3
A
79 88Right-handed alpha
Helix 4
AA4
A
117 127Right-handed alpha
Helix 5
AA5
A
131 135Right-handed 310
Helix 6
AA6
A
145 160Right-handed alpha
Helix 7
AA7
A
164 168Right-handed 310
Helix 8
AA8
A
177 181Right-handed 310
Helix 9
AA9
A
184 200Right-handed alpha
Helix 10
AB1
A
207 215Right-handed alpha
Helix 11
AB2
A
232 252Right-handed alpha
Helix 12
AB3
A
255 260Right-handed alpha
Helix 13
AB4
A
267 272Right-handed alpha
Helix 14
AB5
A
276 293Right-handed alpha
Helix 15
AB6
A
294 316Right-handed alpha
Helix 16
AB7
A
318 346Right-handed alpha
Helix 17
AB8
A
352 361Right-handed alpha
Helix 18
AB9
A
362 374Right-handed alpha
Helix 19
AC1
A
501 517Right-handed alpha
Helix 20
AC2
A
540 560Right-handed alpha
Helix 21
AC3
A
569 573Right-handed 310
Helix 22
AC4
A
592 603Right-handed alpha
Helix 23
AC5
A
763 783Right-handed alpha
Helix 24
AC6
A
791 802Right-handed alpha
Helix 25
AC7
A
824 835Right-handed alpha
Helix 26
AC8
A
884 904Right-handed alpha
Helix 27
AC9
A
921 929Right-handed 310
Helix 28
AD1
A
1045 1062Right-handed alpha
Helix 29
AD2
A
1098 1108Right-handed alpha
Helix 30
AD3
A
1117 1123Right-handed alpha
Helix 31
AD4
A
1171 1180Right-handed alpha
Helix 32
AD5
A
1204 1208Right-handed 310
Helix 33
AD6
A
1223 1231Right-handed alpha
Helix 34
AD7
A
1238 1240Right-handed 310
Helix 35
AD8
A
1248 1256Right-handed alpha
Helix 36
AD9
A
1261 1268Right-handed alpha
Helix 37
AE1
A
1269 1283Right-handed alpha
Helix 38
AE2
A
1519 1535Right-handed alpha
Helix 39
AE3
A
1537 1547Right-handed alpha
Helix 40
AE4
A
1562 1579Right-handed alpha
Helix 41
AE5
A
1608 1616Right-handed alpha
Helix 42
AE6
A
1620 1629Right-handed alpha
Helix 43
AE7
A
1635 1650Right-handed alpha
Helix 44
AE8
A
1665 1669Right-handed 310
Helix 45
AE9
A
1722 1731Right-handed alpha
Helix 46
AF1
A
1741 1764Right-handed alpha
Helix 47
AF2
A
1768 1780Right-handed alpha
Helix 48
AF3
A
1781 1792Right-handed alpha
Helix 49
AF4
A
1899 1914Right-handed alpha
Helix 50
AF5
A
1920 1931Right-handed alpha
Helix 51
AF6
A
1981 1990Right-handed alpha
Helix 52
AF7
A
1992 2001Right-handed alpha
Helix 53
AF8
A
2007 2014Right-handed alpha
Helix 54
AF9
A
2030 2050Right-handed alpha
Helix 55
AG1
A
2055 2067Right-handed alpha
Helix 56
AG2
A
2068 2079Right-handed alpha
Helix 57
AG3
A
2091 2107Right-handed alpha
Helix 58
AG4
A
2110 2121Right-handed alpha
Helix 59
AG5
A
2132 2149Right-handed alpha
Helix 60
AG6
A
2152 2172Right-handed alpha
Helix 61
AG7
A
2178 2187Right-handed alpha
Helix 62
AG8
A
2223 2240Right-handed alpha
Helix 63
AG9
N
359 372Right-handed alpha
Helix 64
AH1
N
376 385Right-handed alpha
Helix 65
AH2
N
394 405Right-handed alpha
Helix 66
AH3
N
443 463Right-handed alpha
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There are 10 sheets in PDB entry 8DGI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 140first strand
Strand 2
A
170 175parallel
Strand 3
A
33 36parallel
Strand 4
A
202 204parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 68first strand
Strand 2
A
113 116parallel
Strand 3
A
93 95parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 529first strand
Strand 2
A
565 567parallel
Strand 3
A
495 498parallel
Strand 4
A
583 586parallel
Strand 5
A
609 614parallel
Strand 6
A
220 225parallel
Strand 7
A
1584 1585parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
847 855first strand
Strand 2
A
858 866anti-parallel
Strand 3
A
877 878anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1022 1026first strand
Strand 2
A
1029 1037anti-parallel
Strand 3
A
975 986anti-parallel
Strand 4
A
1006 1012anti-parallel
Strand 5
A
1083 1089anti-parallel
Strand 6
A
1095 1097anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1236 1237first strand
Strand 2
A
1191 1196anti-parallel
Strand 3
A
1149 1155anti-parallel
Strand 4
A
1135 1138anti-parallel
Strand 5
A
1242 1244anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1937 1940first strand
Strand 2
A
1962 1965anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2191 2193first strand
Strand 2
A
2205 2211anti-parallel
Strand 3
A
2197 2198anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2191 2193first strand
Strand 2
A
2205 2211anti-parallel
Strand 3
A
2215 2221anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
409 414first strand
Strand 2
N
423 429anti-parallel
Strand 3
N
435 441anti-parallel
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