Analysis of interatomic Contacts of Structural Units in PDB entry:
8DGJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DGJ entry

There are 2 chains in PDB entry 8DGJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 13LYS 2240
N
 THR 358LYS 465
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 65 helices in PDB entry 8DGJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 31Right-handed alpha
Helix 2
AA2
A
39 61Right-handed alpha
Helix 3
AA3
A
79 87Right-handed alpha
Helix 4
AA4
A
117 127Right-handed alpha
Helix 5
AA5
A
131 133Right-handed 310
Helix 6
AA6
A
145 159Right-handed alpha
Helix 7
AA7
A
177 181Right-handed 310
Helix 8
AA8
A
184 199Right-handed alpha
Helix 9
AA9
A
207 215Right-handed alpha
Helix 10
AB1
A
232 251Right-handed alpha
Helix 11
AB2
A
265 272Right-handed alpha
Helix 12
AB3
A
276 293Right-handed alpha
Helix 13
AB4
A
294 316Right-handed alpha
Helix 14
AB5
A
319 345Right-handed alpha
Helix 15
AB6
A
353 361Right-handed alpha
Helix 16
AB7
A
362 374Right-handed alpha
Helix 17
AB8
A
501 517Right-handed alpha
Helix 18
AB9
A
541 559Right-handed alpha
Helix 19
AC1
A
569 573Right-handed 310
Helix 20
AC2
A
592 603Right-handed alpha
Helix 21
AC3
A
763 782Right-handed alpha
Helix 22
AC4
A
783 785Right-handed 310
Helix 23
AC5
A
791 801Right-handed alpha
Helix 24
AC6
A
802 804Right-handed 310
Helix 25
AC7
A
824 836Right-handed alpha
Helix 26
AC8
A
884 904Right-handed alpha
Helix 27
AC9
A
921 929Right-handed 310
Helix 28
AD1
A
1045 1062Right-handed alpha
Helix 29
AD2
A
1098 1108Right-handed alpha
Helix 30
AD3
A
1117 1123Right-handed alpha
Helix 31
AD4
A
1171 1181Right-handed alpha
Helix 32
AD5
A
1218 1222Right-handed 310
Helix 33
AD6
A
1223 1232Right-handed alpha
Helix 34
AD7
A
1248 1256Right-handed alpha
Helix 35
AD8
A
1261 1281Right-handed alpha
Helix 36
AD9
A
1519 1535Right-handed alpha
Helix 37
AE1
A
1538 1549Right-handed alpha
Helix 38
AE2
A
1561 1579Right-handed alpha
Helix 39
AE3
A
1608 1616Right-handed alpha
Helix 40
AE4
A
1620 1629Right-handed alpha
Helix 41
AE5
A
1635 1648Right-handed alpha
Helix 42
AE6
A
1665 1669Right-handed 310
Helix 43
AE7
A
1722 1730Right-handed alpha
Helix 44
AE8
A
1741 1763Right-handed alpha
Helix 45
AE9
A
1768 1780Right-handed alpha
Helix 46
AF1
A
1781 1793Right-handed alpha
Helix 47
AF2
A
1899 1914Right-handed alpha
Helix 48
AF3
A
1920 1931Right-handed alpha
Helix 49
AF4
A
1981 1989Right-handed alpha
Helix 50
AF5
A
1992 2001Right-handed alpha
Helix 51
AF6
A
2007 2014Right-handed alpha
Helix 52
AF7
A
2030 2049Right-handed alpha
Helix 53
AF8
A
2055 2067Right-handed alpha
Helix 54
AF9
A
2068 2079Right-handed alpha
Helix 55
AG1
A
2081 2085Right-handed 310
Helix 56
AG2
A
2091 2107Right-handed alpha
Helix 57
AG3
A
2110 2119Right-handed alpha
Helix 58
AG4
A
2132 2148Right-handed alpha
Helix 59
AG5
A
2152 2174Right-handed alpha
Helix 60
AG6
A
2179 2185Right-handed alpha
Helix 61
AG7
A
2223 2238Right-handed alpha
Helix 62
AG8
N
359 371Right-handed alpha
Helix 63
AG9
N
376 385Right-handed alpha
Helix 64
AH1
N
393 405Right-handed alpha
Helix 65
AH2
N
443 464Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 8DGJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
113 116parallel
Strand 3
A
64 68parallel
Strand 4
A
135 140parallel
Strand 5
A
170 175parallel
Strand 6
A
33 36parallel
Strand 7
A
202 204parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 529first strand
Strand 2
A
565 567parallel
Strand 3
A
495 497parallel
Strand 4
A
583 586parallel
Strand 5
A
609 614parallel
Strand 6
A
220 225parallel
Strand 7
A
1584 1585parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
847 855first strand
Strand 2
A
858 866anti-parallel
Strand 3
A
877 878anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1022 1026first strand
Strand 2
A
1029 1037anti-parallel
Strand 3
A
975 986anti-parallel
Strand 4
A
1006 1012anti-parallel
Strand 5
A
1083 1089anti-parallel
Strand 6
A
1095 1097anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1236 1237first strand
Strand 2
A
1192 1195anti-parallel
Strand 3
A
1149 1154anti-parallel
Strand 4
A
1135 1138anti-parallel
Strand 5
A
1242 1245anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1937 1941first strand
Strand 2
A
1961 1965anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2192 2193first strand
Strand 2
A
2205 2211anti-parallel
Strand 3
A
2197 2198anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2192 2193first strand
Strand 2
A
2205 2211anti-parallel
Strand 3
A
2215 2221anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
409 413first strand
Strand 2
N
423 429anti-parallel
Strand 3
N
435 441anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il