Analysis of interatomic Contacts of Structural Units in PDB entry:
8DGM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DGM entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 8DGM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 33THR 232
B
 ALA 67ASN 68
B
 GLU 70ILE 72
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 9 helices in PDB entry 8DGM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 74Right-handed alpha
Helix 2
AA2
A
76 107Right-handed alpha
Helix 3
AA3
A
107 112Right-handed alpha
Helix 4
AA4
A
114 136Right-handed alpha
Helix 5
AA5
A
137 163Right-handed alpha
Helix 6
AA6
A
167 184Right-handed alpha
Helix 7
AA7
A
187 207Right-handed alpha
Helix 8
AA8
A
210 215Right-handed alpha
Helix 9
AA9
A
217 231Right-handed alpha
Back to top of page
There are no sheets in PDB entry 8DGM
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il