Analysis of interatomic Contacts of Structural Units in PDB entry:
8DGO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DGO entry

There are 3 chains in PDB entry 8DGO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1VAL 217
B
 SER 0VAL 217
C
 SER 25LEU 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 8DGO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
66 76Right-handed alpha
Helix 2
AA2
A
127 138Right-handed alpha
Helix 3
AA3
B
66 76Right-handed alpha
Helix 4
AA4
B
127 135Right-handed alpha
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There are 6 sheets in PDB entry 8DGO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 49first strand
Strand 2
A
36 41anti-parallel
Strand 3
A
24 27anti-parallel
Strand 4
A
1 5anti-parallel
Strand 5
A
53 55anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
118 119anti-parallel
Strand 3
A
104 112anti-parallel
Strand 4
A
95 101anti-parallel
Strand 5
A
82 87anti-parallel
Strand 6
A
149 150parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 206first strand
Strand 2
A
193 198anti-parallel
Strand 3
A
182 187anti-parallel
Strand 4
A
160 163anti-parallel
Strand 5
A
210 213anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 49first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
24 27anti-parallel
Strand 4
B
1 5anti-parallel
Strand 5
B
53 55anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 119first strand
Strand 2
B
104 112anti-parallel
Strand 3
B
95 101anti-parallel
Strand 4
B
82 87anti-parallel
Strand 5
B
149 150parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 206first strand
Strand 2
B
193 198anti-parallel
Strand 3
B
182 187anti-parallel
Strand 4
B
160 163anti-parallel
Strand 5
B
210 213anti-parallel
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