Analysis of interatomic Contacts of Structural Units in PDB entry:
8DGP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DGP entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 12 chains in PDB entry 8DGP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2SER 233
B
 ASP 2ASP 234
C
 SER -1ASP 234
D
 THR 0ASP 234
E
 ARG 66GLN 68
E
 LEU 70THR 72
F
 THR 65GLN 68
F
 LEU 70ARG 73
G
 THR 65GLN 68
G
 LEU 70THR 72
H
 THR 65GLN 68
H
 LEU 70THR 72
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 8DGP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-1 17Right-handed alpha
Helix 2
AA2
A
19 32Right-handed alpha
Helix 3
AA3
A
38 74Right-handed alpha
Helix 4
AA4
A
75 107Right-handed alpha
Helix 5
AA5
A
107 112Right-handed alpha
Helix 6
AA6
A
114 136Right-handed alpha
Helix 7
AA7
A
137 163Right-handed alpha
Helix 8
AA8
A
167 184Right-handed alpha
Helix 9
AA9
A
187 205Right-handed alpha
Helix 10
AB1
A
206 209Right-handed 310
Helix 11
AB2
A
211 233Right-handed alpha
Helix 12
AB3
B
3 18Right-handed alpha
Helix 13
AB4
B
19 32Right-handed alpha
Helix 14
AB5
B
38 74Right-handed alpha
Helix 15
AB6
B
75 107Right-handed alpha
Helix 16
AB7
B
107 112Right-handed alpha
Helix 17
AB8
B
114 136Right-handed alpha
Helix 18
AB9
B
137 163Right-handed alpha
Helix 19
AC1
B
167 184Right-handed alpha
Helix 20
AC2
B
187 205Right-handed alpha
Helix 21
AC3
B
206 209Right-handed 310
Helix 22
AC4
B
210 233Right-handed alpha
Helix 23
AC5
C
0 18Right-handed alpha
Helix 24
AC6
C
19 32Right-handed alpha
Helix 25
AC7
C
38 74Right-handed alpha
Helix 26
AC8
C
75 107Right-handed alpha
Helix 27
AC9
C
107 112Right-handed alpha
Helix 28
AD1
C
114 136Right-handed alpha
Helix 29
AD2
C
137 163Right-handed alpha
Helix 30
AD3
C
167 184Right-handed alpha
Helix 31
AD4
C
187 205Right-handed alpha
Helix 32
AD5
C
210 234Right-handed alpha
Helix 33
AD6
D
1 18Right-handed alpha
Helix 34
AD7
D
19 32Right-handed alpha
Helix 35
AD8
D
38 74Right-handed alpha
Helix 36
AD9
D
75 107Right-handed alpha
Helix 37
AE1
D
107 112Right-handed alpha
Helix 38
AE2
D
114 136Right-handed alpha
Helix 39
AE3
D
137 163Right-handed alpha
Helix 40
AE4
D
167 184Right-handed alpha
Helix 41
AE5
D
187 205Right-handed alpha
Helix 42
AE6
D
206 209Right-handed 310
Helix 43
AE7
D
210 233Right-handed alpha
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There are no sheets in PDB entry 8DGP
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