Analysis of interatomic Contacts of Structural Units in PDB entry:
8DGQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DGQ entry

There are 8 chains in PDB entry 8DGQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 172MET 443
B
 SER 173MET 443
U
 SER 1085ASP 1086
U
 ALA 1088ILE 1104
U
 SER 1106HIS 1109
V
 PRO 1084ASP 1086
V
 ALA 1088ILE 1104
V
 SER 1106SER 1111
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8DGQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
177 180Right-handed 310
Helix 2
AA2
A
187 199Right-handed alpha
Helix 3
AA3
A
223 225Right-handed 310
Helix 4
AA4
A
248 259Right-handed alpha
Helix 5
AA5
A
357 368Right-handed alpha
Helix 6
AA6
A
418 429Right-handed alpha
Helix 7
AA7
B
177 180Right-handed 310
Helix 8
AA8
B
187 199Right-handed alpha
Helix 9
AA9
B
248 257Right-handed alpha
Helix 10
AB1
B
357 368Right-handed alpha
Helix 11
AB2
B
418 429Right-handed alpha
Helix 12
AB3
U
1099 1103Right-handed 310
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There are 8 sheets in PDB entry 8DGQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 186first strand
Strand 2
A
203 209parallel
Strand 3
A
216 221anti-parallel
Strand 4
A
227 235anti-parallel
Strand 5
A
238 241anti-parallel
Strand 6
A
244 246anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 186first strand
Strand 2
A
203 209parallel
Strand 3
A
270 271parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 332first strand
Strand 2
A
317 322anti-parallel
Strand 3
A
306 312anti-parallel
Strand 4
A
282 286anti-parallel
Strand 5
A
336 338anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 378first strand
Strand 2
A
386 391anti-parallel
Strand 3
A
396 403anti-parallel
Strand 4
A
409 411anti-parallel
Strand 5
A
414 416anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 186first strand
Strand 2
B
203 209parallel
Strand 3
B
215 221anti-parallel
Strand 4
B
227 235anti-parallel
Strand 5
B
238 241anti-parallel
Strand 6
B
244 246anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 186first strand
Strand 2
B
203 209parallel
Strand 3
B
270 271parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 332first strand
Strand 2
B
317 322anti-parallel
Strand 3
B
306 312anti-parallel
Strand 4
B
282 286anti-parallel
Strand 5
B
336 338anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
374 378first strand
Strand 2
B
386 391anti-parallel
Strand 3
B
396 403anti-parallel
Strand 4
B
409 411anti-parallel
Strand 5
B
414 416anti-parallel
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