Analysis of interatomic Contacts of Structural Units in PDB entry:
8DGS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DGS entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 7 chains in PDB entry 8DGS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 155SER 364
A
 ALA 366ALA 728
A
 GLU 730PHE 738
B
 GLU 38GLN 383
C
 ASP 2SER 230
D
 ASP 2SER 230
E
 MET 1LYS 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 8DGS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
176 188Right-handed alpha
Helix 2
AA2
A
191 193Right-handed 310
Helix 3
AA3
A
213 218Right-handed 310
Helix 4
AA4
A
271 276Right-handed 310
Helix 5
AA5
A
491 507Right-handed alpha
Helix 6
AA6
A
536 543Right-handed alpha
Helix 7
AA7
A
549 570Right-handed alpha
Helix 8
AA8
A
578 580Right-handed 310
Helix 9
AA9
A
586 588Right-handed 310
Helix 10
AB1
A
621 627Right-handed alpha
Helix 11
AB2
A
634 652Right-handed alpha
Helix 12
AB3
A
661 671Right-handed alpha
Helix 13
AB4
A
686 697Right-handed alpha
Helix 14
AB5
A
706 720Right-handed alpha
Helix 15
AB6
A
720 725Right-handed alpha
Helix 16
AB7
B
43 59Right-handed alpha
Helix 17
AB8
B
64 66Right-handed 310
Helix 18
AB9
B
104 116Right-handed alpha
Helix 19
AC1
B
117 121Right-handed 310
Helix 20
AC2
B
151 159Right-handed alpha
Helix 21
AC3
B
162 184Right-handed alpha
Helix 22
AC4
B
192 194Right-handed 310
Helix 23
AC5
B
212 221Right-handed alpha
Helix 24
AC6
B
233 237Right-handed 310
Helix 25
AC7
B
241 259Right-handed alpha
Helix 26
AC8
B
268 273Right-handed alpha
Helix 27
AC9
B
309 319Right-handed alpha
Helix 28
AD1
B
331 342Right-handed alpha
Helix 29
AD2
B
351 357Right-handed alpha
Helix 30
AD3
B
358 367Right-handed alpha
Helix 31
AD4
B
370 380Right-handed alpha
Helix 32
AD5
C
3 17Right-handed alpha
Helix 33
AD6
C
18 32Right-handed alpha
Helix 34
AD7
C
37 70Right-handed alpha
Helix 35
AD8
C
73 105Right-handed alpha
Helix 36
AD9
C
111 131Right-handed alpha
Helix 37
AE1
C
135 160Right-handed alpha
Helix 38
AE2
C
164 182Right-handed alpha
Helix 39
AE3
C
184 202Right-handed alpha
Helix 40
AE4
C
211 229Right-handed alpha
Helix 41
AE5
D
3 16Right-handed alpha
Helix 42
AE6
D
19 33Right-handed alpha
Helix 43
AE7
D
37 69Right-handed alpha
Helix 44
AE8
D
74 104Right-handed alpha
Helix 45
AE9
D
111 133Right-handed alpha
Helix 46
AF1
D
134 160Right-handed alpha
Helix 47
AF2
D
164 181Right-handed alpha
Helix 48
AF3
D
184 202Right-handed alpha
Helix 49
AF4
D
208 211Right-handed 310
Helix 50
AF5
D
212 230Right-handed alpha
Helix 51
AF6
E
15 26Right-handed alpha
Helix 52
AF7
E
61 63Right-handed 310
Helix 53
AF8
E
64 75Right-handed alpha
Helix 54
AF9
E
86 92Right-handed alpha
Helix 55
AG1
E
92 105Right-handed alpha
Helix 56
AG2
E
126 137Right-handed alpha
Helix 57
AG3
E
151 167Right-handed alpha
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There are 7 sheets in PDB entry 8DGS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 170first strand
Strand 2
A
156 161anti-parallel
Strand 3
A
221 226parallel
Strand 4
A
195 199anti-parallel
Strand 5
A
206 208anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 241first strand
Strand 2
A
257 261anti-parallel
Strand 3
A
267 269anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 465first strand
Strand 2
A
469 475anti-parallel
Strand 3
A
479 485anti-parallel
Strand 4
A
526 530anti-parallel
Strand 5
A
516 520anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 585first strand
Strand 2
A
589 592anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 76first strand
Strand 2
B
80 87anti-parallel
Strand 3
B
93 99anti-parallel
Strand 4
B
138 143anti-parallel
Strand 5
B
129 135anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
196 198anti-parallel
Strand 3
B
204 206anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
37 46first strand
Strand 2
E
49 58anti-parallel
Strand 3
E
2 10parallel
Strand 4
E
77 83parallel
Strand 5
E
111 116parallel
Strand 6
E
141 143parallel
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