Analysis of interatomic Contacts of Structural Units in PDB entry:
8DGT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8DGT entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 7 chains in PDB entry 8DGT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 151SER 364
A
 ALA 366ALA 728
A
 GLU 730PHE 738
B
 ASP 43SER 385
C
 ASP 2SER 230
D
 ASP 2SER 230
F
 MET 1LYS 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 8DGT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
176 187Right-handed alpha
Helix 2
AA2
A
191 195Right-handed 310
Helix 3
AA3
A
213 218Right-handed 310
Helix 4
AA4
A
269 276Right-handed 310
Helix 5
AA5
A
491 506Right-handed alpha
Helix 6
AA6
A
536 543Right-handed alpha
Helix 7
AA7
A
549 570Right-handed alpha
Helix 8
AA8
A
578 580Right-handed 310
Helix 9
AA9
A
586 588Right-handed 310
Helix 10
AB1
A
621 627Right-handed alpha
Helix 11
AB2
A
634 652Right-handed alpha
Helix 12
AB3
A
661 671Right-handed alpha
Helix 13
AB4
A
686 697Right-handed alpha
Helix 14
AB5
A
700 704Right-handed 310
Helix 15
AB6
A
706 720Right-handed alpha
Helix 16
AB7
A
720 725Right-handed alpha
Helix 17
AB8
B
44 59Right-handed alpha
Helix 18
AB9
B
64 66Right-handed 310
Helix 19
AC1
B
104 115Right-handed alpha
Helix 20
AC2
B
116 120Right-handed 310
Helix 21
AC3
B
151 159Right-handed alpha
Helix 22
AC4
B
162 183Right-handed alpha
Helix 23
AC5
B
212 220Right-handed alpha
Helix 24
AC6
B
242 259Right-handed alpha
Helix 25
AC7
B
267 273Right-handed alpha
Helix 26
AC8
B
309 320Right-handed alpha
Helix 27
AC9
B
331 342Right-handed alpha
Helix 28
AD1
B
351 357Right-handed alpha
Helix 29
AD2
B
358 367Right-handed alpha
Helix 30
AD3
B
370 380Right-handed alpha
Helix 31
AD4
C
3 16Right-handed alpha
Helix 32
AD5
C
20 32Right-handed alpha
Helix 33
AD6
C
37 70Right-handed alpha
Helix 34
AD7
C
73 102Right-handed alpha
Helix 35
AD8
C
111 131Right-handed alpha
Helix 36
AD9
C
137 160Right-handed alpha
Helix 37
AE1
C
164 181Right-handed alpha
Helix 38
AE2
C
184 202Right-handed alpha
Helix 39
AE3
C
207 210Right-handed 310
Helix 40
AE4
C
211 229Right-handed alpha
Helix 41
AE5
D
3 16Right-handed alpha
Helix 42
AE6
D
19 33Right-handed alpha
Helix 43
AE7
D
37 67Right-handed alpha
Helix 44
AE8
D
75 89Right-handed alpha
Helix 45
AE9
D
90 104Right-handed alpha
Helix 46
AF1
D
111 133Right-handed alpha
Helix 47
AF2
D
135 160Right-handed alpha
Helix 48
AF3
D
164 181Right-handed alpha
Helix 49
AF4
D
184 202Right-handed alpha
Helix 50
AF5
D
212 230Right-handed alpha
Helix 51
AF6
F
15 26Right-handed alpha
Helix 52
AF7
F
61 63Right-handed 310
Helix 53
AF8
F
64 75Right-handed alpha
Helix 54
AF9
F
86 92Right-handed alpha
Helix 55
AG1
F
92 105Right-handed alpha
Helix 56
AG2
F
126 137Right-handed alpha
Helix 57
AG3
F
151 167Right-handed alpha
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There are 6 sheets in PDB entry 8DGT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
196 199anti-parallel
Strand 3
A
221 225anti-parallel
Strand 4
A
156 161parallel
Strand 5
A
165 170anti-parallel
Strand 6
F
37 46anti-parallel
Strand 7
F
49 58anti-parallel
Strand 8
F
2 10parallel
Strand 9
F
77 83parallel
Strand 10
F
111 116parallel
Strand 11
F
141 143parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 241first strand
Strand 2
A
257 261anti-parallel
Strand 3
A
267 268anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 465first strand
Strand 2
A
469 475anti-parallel
Strand 3
A
479 485anti-parallel
Strand 4
A
526 530anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 585first strand
Strand 2
A
589 592anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 76first strand
Strand 2
B
80 87anti-parallel
Strand 3
B
93 99anti-parallel
Strand 4
B
138 144anti-parallel
Strand 5
B
129 135anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
196 198anti-parallel
Strand 3
B
204 206anti-parallel
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